PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g00890
Common NameGSCOC_T00019171001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 254aa    MW: 28832.7 Da    PI: 9.2047
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g00890genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.0004898119323
                  ETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                  C+ C+++++++ +L  H +  H
  Cc07_g00890  98 CSVCSRVYPTSRLLSIHVSEvH 119
                  *****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.566994IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807194IPR007087Zinc finger, C2H2
SMARTSM003553.396119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028098119IPR007087Zinc finger, C2H2
SMARTSM003550.9134159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280136159IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MAMEVEVSRE DLLKFPYWSP IRRRFDPESS FFAAGNVERE LLAKQVALDL TEEAKLQFRN  60
MEDEESSKLY CPLVGCGAHL RSLDEFEDHY TSQHSAACSV CSRVYPTSRL LSIHVSEVHD  120
SFFQAKVARG FAMYECLVEG CGLKLKSYKG RQQHLVDKHK FPTSFEFFKK AHPSKKQRKK  180
DQHKQAFGKK EAASRATQME EDTMDNLVSA VSKLSASDSP SSISFGRRHN RGLTFVPRAV  240
RQAKEPESSA RRS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027101908.11e-175zinc finger protein 511
RefseqXP_027153916.11e-175zinc finger protein 511
TrEMBLA0A068V7V90.0A0A068V7V9_COFCA; Uncharacterized protein
STRINGXP_009620329.11e-130(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102112022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-110zinc ion binding;nucleic acid binding;zinc ion binding