PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g01190
Common NameGSCOC_T00019208001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 280aa    MW: 32289.5 Da    PI: 5.8341
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g01190genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.87.4e-1780180198
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                  f+k+l +sdv+ ++r+vlpk+ aee+   ++++e++ +t+ d +g  +W++k+++  +++s++y+++ ++  Fvk +gL+ gD +v++  ++  ++++
  Cc07_g01190  80 FEKELQRSDVGPLRRIVLPKRAAEEYlpVLESKEGMFITMDDMDGnHVWRLKFRFwpNNNSRMYLFE-NTGVFVKTHGLRHGDYIVLY--QNlVDRNY 174
                  89**************************55666899******998799*****99777777777776.********************..77788888 PP

                  EEEEE- CS
           B3  93 vvkvfr 98 
                  v+++++
  Cc07_g01190 175 VIQARK 180
                  887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-2572180IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.79E-2078175IPR015300DNA-binding pseudobarrel domain
CDDcd100171.79E-2178180No hitNo description
SMARTSM010192.9E-1580182IPR003340B3 DNA binding domain
PROSITE profilePS508639.5380182IPR003340B3 DNA binding domain
PfamPF023622.7E-1480180IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MRKCRTKAEV EFLQQLKIYS GGQERAREKF PNLQIPIWPH KIGWHVRLLL ELFKSTFFCV  60
EENERHTAEV IDPTRLRFLF EKELQRSDVG PLRRIVLPKR AAEEYLPVLE SKEGMFITMD  120
DMDGNHVWRL KFRFWPNNNS RMYLFENTGV FVKTHGLRHG DYIVLYQNLV DRNYVIQARK  180
AYDSVVHDTS GHGAQGILSD YAASDVVRGP ESEINASGYI PEMFPPVNEM GDMSFIYDTS  240
FSNDSPLDYL GGPMTDFSRV GGHESNFGSI DNLSLDDFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-46761811106B3 domain-containing transcription factor FUS3
6j9b_D2e-46761811106B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027102113.11e-152B3 domain-containing transcription factor FUS3
TrEMBLA0A068V7Y10.0A0A068V7Y1_COFCA; Uncharacterized protein
STRINGEOY029172e-77(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80452125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.12e-57B3 family protein