PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g01770
Common NameGSCOC_T00039353001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family LBD
Protein Properties Length: 174aa    MW: 19176.4 Da    PI: 7.3347
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g01770genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260140.46e-4410108199
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el++++
  Cc07_g01770  10 PCAACKFLRRKCLPGCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEIQPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQKELDATN 107
                  7*********************************************************************************************9987 PP

       DUF260  99 e 99 
                  +
  Cc07_g01770 108 A 108
                  6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.6269110IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-4310107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MASSSYSNSP CAACKFLRRK CLPGCIFAPY FPPEEPQKFA NVHKIFGASN VSKLLNEIQP  60
HQREDAVNSL AYEAEARLKD PVYGCVGAIS VLQRQVLRLQ KELDATNADL MRYASNEMPQ  120
GYPGNSGSNQ MGRRMNNAGS SFGQYEYPSP YYMSSWDNSF SGDHPDKPGD SNT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-6871188119LOB family transfactor Ramosa2.1
5ly0_B3e-6871188119LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNot known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9646660.0HG964666.1 Coffea arabica clone BAC 126-3E, cultivar IAPAR 59.
GenBankHG9646670.0HG964667.1 Coffea arabica clone BAC 144-23N, cultivar IAPAR 59.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027073953.11e-127LOB domain-containing protein 25-like
RefseqXP_027101865.11e-127LOB domain-containing protein 25-like
RefseqXP_027154136.11e-127LOB domain-containing protein 25
SwissprotQ8L8Q31e-69LBD25_ARATH; LOB domain-containing protein 25
SwissprotQ9FML41e-69LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLA0A068U1811e-126A0A068U181_COFCA; Uncharacterized protein
STRINGPOPTR_0001s35280.18e-85(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.15e-72LOB domain-containing protein 25
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]
  3. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]