PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g02340
Common NameGSCOC_T00039421001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 280aa    MW: 31618.9 Da    PI: 4.417
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g02340genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.19.5e-2164117356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k++++t+eq++ Le+ Fe ++++  e++++LAkklgL+ rqV vWFqNrRa++k
  Cc07_g02340  64 KKRRLTPEQVHLLEKSFEAENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 117
                  56689************************************************9 PP
2HD-ZIP_I/II129.61.3e-4163153191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekkrrl+ eqv+lLE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy+++k++yd+l+++ +++ ke+e+L++e+
  Cc07_g02340  63 EKKRRLTPEQVHLLEKSFEAENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDQVKSSYDSLRSDYDSVVKENEKLKTEV 153
                  69*************************************************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.99359119IPR001356Homeobox domain
SMARTSM003898.0E-2062123IPR001356Homeobox domain
SuperFamilySSF466891.11E-1964129IPR009057Homeodomain-like
PfamPF000465.8E-1864117IPR001356Homeobox domain
CDDcd000865.26E-1964120No hitNo description
Gene3DG3DSA:1.10.10.602.3E-2265126IPR009057Homeodomain-like
PRINTSPR000314.2E-69099IPR000047Helix-turn-helix motif
PROSITE patternPS00027094117IPR017970Homeobox, conserved site
PRINTSPR000314.2E-699115IPR000047Helix-turn-helix motif
PfamPF021833.1E-17119161IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDSGRIYFDP SCHGNMLFLG SGNPVFPGAR SVLNVEETLK RRPFLRSPEE LFDEEYYEEQ  60
LAEKKRRLTP EQVHLLEKSF EAENKLEPER KTQLAKKLGL QPRQVAVWFQ NRRARWKTKQ  120
LERDYDQVKS SYDSLRSDYD SVVKENEKLK TEVLSLTEKL QQGKEVVVEP RSKQKSDALP  180
VDELLASDPQ FNVKVEDRLS TGSGGSAVVD EDGPQLVDSG DSYFPCDDYA AGCVTPAADG  240
VQSEEDDGSD NGQNYLSNVF VAAEQQNQEG EPVGWWVWS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111119RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074934.10.0homeobox-leucine zipper protein HAT5-like isoform X1
SwissprotQ022833e-95HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A068U1T90.0A0A068U1T9_COFCA; Uncharacterized protein
STRINGEOY023591e-140(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA78912330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.16e-89homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]