PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g03210
Common NameGSCOC_T00039542001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 246aa    MW: 27704.1 Da    PI: 5.214
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g03210genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-183183456
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 + +++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  Cc07_g03210 31 KKRLNLEQVKVLEKSFELGSKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 83
                 4568889*********************************************9 PP
2HD-ZIP_I/II123.21.3e-3929120192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekk+rl+ eqvk+LE+sFe  +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkq+Ekdye+Lkr+++ lk++ne L++++++ ++el 
  Cc07_g03210  29 EKKKRLNLEQVKVLEKSFELGSKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQMEKDYEVLKRQVEILKADNELLRAQNKRFHSELV 120
                  69************************************************************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.71E-191887IPR009057Homeodomain-like
PROSITE profilePS5007116.732585IPR001356Homeobox domain
SMARTSM003898.7E-182889IPR001356Homeobox domain
CDDcd000863.39E-163086No hitNo description
PfamPF000467.6E-163183IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.9E-193392IPR009057Homeodomain-like
PRINTSPR000317.0E-65665IPR000047Helix-turn-helix motif
PROSITE patternPS0002706083IPR017970Homeobox, conserved site
PRINTSPR000317.0E-66581IPR000047Helix-turn-helix motif
PfamPF021832.5E-1085123IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MSFSGVDMSE EALRLEDDMS DDGAAPLGEK KKRLNLEQVK VLEKSFELGS KLEPERKMQL  60
ARALGLQPRQ VAIWFQNRRA RWKTKQMEKD YEVLKRQVEI LKADNELLRA QNKRFHSELV  120
ALQSVELSAA VEPINLNNRE NEASWSSGSR ENSIDVNLGT TSVETGLIIP NSHPTSNHMP  180
FPSTMEQPAV GPTHHLLQAS LGPDLQGPRI DQTTSDEALC NAFNNIEEQP SFSPWSTWPN  240
QQNFR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17785RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:12644682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027153132.11e-180homeobox-leucine zipper protein ATHB-20-like
SwissprotQ8LAT01e-58ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20
TrEMBLA0A068U1551e-180A0A068U155_COFCA; Uncharacterized protein
STRINGXP_010256832.18e-79(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01220.14e-61homeobox protein 20