PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g03240
Common NameGSCOC_T00039545001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 94aa    MW: 10400.7 Da    PI: 8.5174
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g03240genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.39.8e-0722581854
                 HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                 +  ++L++llP+ +   +s K s + +L+ +++YI+sL
  Cc07_g03240 22 ELVSKLQQLLPEiR-TRRSNKASASKVLQDTCNYIRSL 58
                 55689*******77.799999***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.87458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-71973IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-82077IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MSSRRSRQSS GSSRITDDQI IELVSKLQQL LPEIRTRRSN KASASKVLQD TCNYIRSLHK  60
EVDDLSDRLS QLLSTIDADS PEAAIIRSLL AES*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027073646.13e-58transcription factor PRE5-like
RefseqXP_027153686.13e-58transcription factor PRE5-like
SwissprotQ9LJX14e-42PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A068U2518e-57A0A068U251_COFCA; Uncharacterized protein
STRINGXP_009758713.17e-50(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.15e-28bHLH family protein