PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g03370
Common NameGSCOC_T00039565001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ZF-HD
Protein Properties Length: 363aa    MW: 39027 Da    PI: 8.0626
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g03370genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1123.1e-3576132459
  ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                  v+YkeClkNhAaslGghavDGCgEfmps++++ +++++lkCaACgCHRnFHRre+ee
  Cc07_g03370  76 VTYKECLKNHAASLGGHAVDGCGEFMPSPTATpTDPTSLKCAACGCHRNFHRREPEE 132
                  79******************************9********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.9E-2976130IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.2E-3277129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.20778129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-1778128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.7E-29219287IPR009057Homeodomain-like
SuperFamilySSF466892.09E-19220287IPR009057Homeodomain-like
TIGRFAMsTIGR015658.6E-27226283IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDLTVTNTTI TTTASVKTPE AETETPTRIQ PSKPSSFSNG VLKRHPAVHH HFHHHHASFN  60
NNSNHHHHHP HAALLVTYKE CLKNHAASLG GHAVDGCGEF MPSPTATPTD PTSLKCAACG  120
CHRNFHRREP EEPLPPPNTT AALEYQPHHR HHPPPPVPPA QRSSGGHSSP SSPSPPPISS  180
SYYPSAPHML LALSAGLSGP PQDSNIPITP TANLGAAVTA GNSNGRKRFR TKFTPNQKEK  240
MLDFAEKIGW KIQKRDEDLI AEFCNEIGVD KGVLKVWMHN NKNTFGKRDQ ANISSGGANS  300
GAAGAAATTD NGNGMEFTIH YHHQNHENNN DNKNGSHNHE LMHHSDSVSA HVVATNGSSS  360
SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-222272841875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00387DAPTransfer from AT3G28920Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075059.11e-174zinc-finger homeodomain protein 9-like
RefseqXP_027151497.11e-174zinc-finger homeodomain protein 9-like
SwissprotQ9LHF05e-74ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBLA0A068U1S40.0A0A068U1S4_COFCA; Uncharacterized protein
STRINGXP_009620291.11e-120(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.11e-31homeobox protein 34
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]