PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc07_g04300

Common Name

GSCOC_T00039684001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

TCP

Protein Properties

Length: 408aa MW: 44365 Da PI: 7.0937

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc07_g04300	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	99.7	5.1e-31	63	187	2	105
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........... 88 g+kdrhsk++T +g+RdRRvRls+++a +++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ s+ + + + +++++ g Cc07_g04300 63 FGGKDRHSKVCTVRGLRDRRVRLSVPTAVQLYDLQDRLGLSQPSKVVDWLLNAAKHEIDELPPLQMPPGSFNHSFQPVWATHHPVVGahqvtkdqglr 160 689*************************************************************7777644433444444443333333333334455 PP TCP 89 ..........kaaksaakskksqksaa 105 ++ +s+++++k+ +s+a Cc07_g04300 161 igasinwgdhDHHPSEPSGSKTWDSDA 187 555555555533333333333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.8E-28	65	175	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.206	65	123	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MIAREIDAAA DVTAKQEGNT ATDEKTSNYK ASISGTSAAA ASSSSSSWSR LKDPRIVRVS 60 RAFGGKDRHS KVCTVRGLRD RRVRLSVPTA VQLYDLQDRL GLSQPSKVVD WLLNAAKHEI 120 DELPPLQMPP GSFNHSFQPV WATHHPVVGA HQVTKDQGLR IGASINWGDH DHHPSEPSGS 180 KTWDSDAILR PKSKELIARS GDSSEDKETW TRSSEEGKQH SNNYESTSHG AAYFSSNNFF 240 SRLGHSTSPS LGLLNSTVLP YNSLIRWDPS NLSLSQSGSP SGLTPVPQPE DFHNFSVVPL 300 PSTMSVPSGG PQVLLYQPAS SITQSYFPSH IAPPVTVDYA QKQIEFQMLN STTENPLTSS 360 LAPPVSDSTS QHAAGRPFRI LSTTTNLLPS QNDRESKQDL DNDFSSR*

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MIAREIDAAA DVTAKQEGNT ATDEKTSNYK ASISGTSAAA ASSSSSSWSR LKDPRIVRVS  60
RAFGGKDRHS KVCTVRGLRD RRVRLSVPTA VQLYDLQDRL GLSQPSKVVD WLLNAAKHEI  120
DELPPLQMPP GSFNHSFQPV WATHHPVVGA HQVTKDQGLR IGASINWGDH DHHPSEPSGS  180
KTWDSDAILR PKSKELIARS GDSSEDKETW TRSSEEGKQH SNNYESTSHG AAYFSSNNFF  240
SRLGHSTSPS LGLLNSTVLP YNSLIRWDPS NLSLSQSGSP SGLTPVPQPE DFHNFSVVPL  300
PSTMSVPSGG PQVLLYQPAS SITQSYFPSH IAPPVTVDYA QKQIEFQMLN STTENPLTSS  360
LAPPVSDSTS QHAAGRPFRI LSTTTNLLPS QNDRESKQDL DNDFSSR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	4e-17	70	124	1	55	Putative transcription factor PCF6
5zkt_B	4e-17	70	124	1	55	Putative transcription factor PCF6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027073406.1	0.0	transcription factor TCP5-like
Refseq	XP_027073407.1	0.0	transcription factor TCP5-like
Refseq	XP_027073408.1	0.0	transcription factor TCP5-like
TrEMBL	A0A068U1B6	0.0	A0A068U1B6_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA821	24	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.1	6e-44	plastid transcription factor 1