PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g04430
Common NameGSCOC_T00039699001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 255aa    MW: 29117.8 Da    PI: 8.6281
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g04430genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding651.4e-201865148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ll+++v ++G g+W+++a+  g++Rt+k+c++rw +yl
      Cc07_g04430 18 KGPWTPEEDKLLIEYVSLHGEGRWSSVAKSAGLHRTGKSCRLRWVNYL 65
                     79********************************************97 PP
2Myb_DNA-binding51.22.9e-1671115147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++
      Cc07_g04430  71 RGHLTPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 115
                      6778******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.3091769IPR017930Myb domain
SMARTSM007172.5E-181767IPR001005SANT/Myb domain
SuperFamilySSF466891.16E-3117112IPR009057Homeodomain-like
PfamPF002499.9E-201865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-251972IPR009057Homeodomain-like
CDDcd001678.23E-142065No hitNo description
PROSITE profilePS5129419.82770120IPR017930Myb domain
SMARTSM007177.9E-1470118IPR001005SANT/Myb domain
PfamPF002493.5E-1471115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-2473119IPR009057Homeodomain-like
CDDcd001675.51E-1075116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MVVGMMGWNV HEQGWWRKGP WTPEEDKLLI EYVSLHGEGR WSSVAKSAGL HRTGKSCRLR  60
WVNYLRPGLK RGHLTPQEEG IIIELHALWG NKWSTIARYL PGRTDNEIKN YWRTHFKKKG  120
KPSEKKDRRR LLKQKMEQDE TGTGAKASPL SEVTSEQTLS PELQAQQEFP TVPLHPVMEN  180
PQLPVLYQEA DSWSDTNILM DGLSGWLWNF DDQNGKGVQA NNDCSKMAKQ NQASFAPYSF  240
GFDNVDVQNG GYIY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-261811927127MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027073824.10.0transcription factor MYB59-like
TrEMBLA0A068U3Z30.0A0A068U3Z3_COFCA; Uncharacterized protein
STRINGEOY037853e-88(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.11e-69myb domain protein 121