PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g04750
Common NameGSCOC_T00039735001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family CO-like
Protein Properties Length: 394aa    MW: 43586.4 Da    PI: 6.3361
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g04750genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.71.8e-061757438
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                 r+C+++ +   + +C+ ++ +lC  C   +H        H+
  Cc07_g04750 17 RVCDTCRSAACTVYCRADSAYLCTGCDARIHAAnkvasrHE 57
                 79******99*********************6556666676 PP
2zf-B_box29.91.2e-0959104342
     zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                   ++C+ +e+ ++ + C+ +   lC+ C + +H+       H +vp+
  Cc07_g04750  59 VWVCEACERAPAAFLCKADAASLCAACDSDIHSAnplarrHHRVPI 104
                  689*****************************66899999877775 PP
3CCT712.9e-24324367144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Cc07_g04750 324 REAKVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 367
                  9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.6E-91461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.3521461IPR000315B-box-type zinc finger
CDDcd000212.52E-71761No hitNo description
PROSITE profilePS5011911.09257104IPR000315B-box-type zinc finger
PfamPF006431.7E-758104IPR000315B-box-type zinc finger
CDDcd000214.27E-960104No hitNo description
SMARTSM003364.0E-962104IPR000315B-box-type zinc finger
PfamPF062035.7E-18324366IPR010402CCT domain
PROSITE profilePS5101716.618324366IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MLKQEDTNGG GANTWARVCD TCRSAACTVY CRADSAYLCT GCDARIHAAN KVASRHERVW  60
VCEACERAPA AFLCKADAAS LCAACDSDIH SANPLARRHH RVPILPIPGT LYGPPATDPG  120
GSMIGQDTED ADDGFLTQDV DETIDENDED EAASWLLLNP VKNNSHHHHH HQNNNSNNNM  180
LFGGEVVDEY LDLVEYSSCQ ENQYTSHHQY SNQQQHYAVP QKSYGGDSVV PVRSGGAKDQ  240
LQLQHQHHQS FQLGLEYEAS NTGYAYPVSS MSHSVSISSM DCGVVPESTM SDVSISHHRP  300
PKGTIDLFAS PPIQMPQQLT PMDREAKVLR YREKKKTRKF EKTIRYASRK AYAETRPRIK  360
GRFAKRTDVE VEVDQMLSTA LMVESGYGIV PSF*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9556000.0JQ955600.1 Coffea arabica constans-like protein (COL) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027076653.10.0zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965021e-142COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A068U1F80.0A0A068U1F8_COFCA; Uncharacterized protein
STRINGGorai.008G059900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52482337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-100CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]