PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g05470
Common NameGSCOC_T00039820001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 365aa    MW: 41671 Da    PI: 8.2107
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g05470genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.43.1e-1426114299
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  fkv   s+v+ +g +++p  f++ehg++   +k + l+ ++g sW v l   +++ +++l+kGW+eF++   ++   f+vF+++g+s+f  +v +f+ 
  Cc07_g05470  26 FKVV-LSSVG-QG-IRIPTAFMREHGES--LKKVVWLKVPTGASWPVAL--LQTDVGTWLRKGWREFAEYYTIDRSYFLVFRYEGNSQF--YVIIFDP 114
                  5555.23444.34.89*********855..778999*************..999999****************************9999..9999875 PP
2B3521.2e-16267362198
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                  f+  + ps+v+ s  + +p +f++++     ++++ +  l+  e  ++W+ ++  + +s+   + +GWkeFv +n+L +gD++vF+l+   + f  +v
  Cc07_g05470 267 FIVFMQPSYVSGSFTVNIPLTFVRDYltT--TQSHLDWELRLsEGKKKWSARC--TFHSRNAKIYRGWKEFVVENNLVTGDVCVFELVMGaKIF--NV 358
                  677899********************653..4455555555514559******..7777777899*********************98543777..66 PP

                  EEE- CS
           B3  95 kvfr 98 
                  +v+r
  Cc07_g05470 359 TVYR 362
                  6665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-2120115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-2021115IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.3522115IPR003340B3 DNA binding domain
CDDcd100173.68E-1523113No hitNo description
PfamPF023621.5E-1125113IPR003340B3 DNA binding domain
SMARTSM010198.9E-1125115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.8E-21259362IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.63E-19260362IPR015300DNA-binding pseudobarrel domain
CDDcd100174.06E-20265362No hitNo description
PfamPF023621.6E-14267361IPR003340B3 DNA binding domain
SMARTSM010195.5E-13267364IPR003340B3 DNA binding domain
PROSITE profilePS5086312.872267364IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MATGQRGKKG SHQTTNNPAK NPPHFFKVVL SSVGQGIRIP TAFMREHGES LKKVVWLKVP  60
TGASWPVALL QTDVGTWLRK GWREFAEYYT IDRSYFLVFR YEGNSQFYVI IFDPTASEIE  120
YPVEAGKEQG VHDNDLDQLP RRRTNPVQIF DEIESDDDSI EILEEIPAAA SSSHAHNRRK  180
SAQVDGNRQY PMESGHHGMH DRQGQLPRRT SLVRKPEEIY SDDDDDDESI EIVEEISAPC  240
KGRSALKKST SIAYQRAKAF KSKCPFFIVF MQPSYVSGSF TVNIPLTFVR DYLTTTQSHL  300
DWELRLSEGK KKWSARCTFH SRNAKIYRGW KEFVVENNLV TGDVCVFELV MGAKIFNVTV  360
YRRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1623736219141B3 domain-containing transcription factor VRN1
4i1k_B2e-1623736219141B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027078302.11e-142B3 domain-containing transcription factor VRN1-like
TrEMBLA0A068U2850.0A0A068U285_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.12e-21B3 family protein