PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g05490
Common NameGSCOC_T00039822001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 259aa    MW: 29888.8 Da    PI: 10.053
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g05490genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.83e-16693193
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..E CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelv 93
                 ffkvl   + + +++l++p  f+++++++   ++   l+++sg++W vk+   + ++ry +t+GW +Fv++ +L+ gD +vF l+ +  s+f+  
  Cc07_g05490  6 FFKVL--VHDS-KSILRIPTLFVSRFEEI--LPQHALLKTKSGETWPVKI--VRIDERYCFTDGWPKFVNDLKLEIGDLLVFWLIiEArSSFKVA 93
                 77888..4444.456***********877..7778***************..******************************9875444666443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.35E-212100IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.563398IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-18397IPR015300DNA-binding pseudobarrel domain
CDDcd100174.05E-17495No hitNo description
SMARTSM010191.4E-12698IPR003340B3 DNA binding domain
PfamPF023628.1E-14694IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.8E-10164256IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-12165250IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.614165258IPR003340B3 DNA binding domain
SMARTSM010191.2168254IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDFPSFFKVL VHDSKSILRI PTLFVSRFEE ILPQHALLKT KSGETWPVKI VRIDERYCFT  60
DGWPKFVNDL KLEIGDLLVF WLIIEARSSF KVAIYGIRGC EKEFNSAATN HCPIKVEQAE  120
STELDLRSIR ILQPKPSDTD AKRRKLKRNE NPSCGAQKSF NSVEDRRFTK VMAKHHRYRL  180
HVPLLFAEKT GLMGKTQVEL RYQNGWSTNV VLKQSTKPHM LDMCAGWPEF RKKNRLLCGK  240
KCAFDYVPET GSIQVQLL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027078229.10.0putative B3 domain-containing protein At5g66980
TrEMBLA0A068U2P70.0A0A068U2P7_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6635931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.19e-15B3 family protein