PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g05730
Common NameGSCOC_T00039853001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family G2-like
Protein Properties Length: 381aa    MW: 42578 Da    PI: 6.9565
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g05730genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.71.5e-29242297156
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                  k+r++W+++LH++Fv+a+ +LGG++ AtPk+i+e+m+v+gLt+++vkSHLQkYRl+
  Cc07_g05730 242 KQRRCWSHDLHQNFVKALFELGGAQAATPKHIREIMQVDGLTNDEVKSHLQKYRLH 297
                  79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.646239299IPR017930Myb domain
SuperFamilySSF466894.39E-15240300IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-27240300IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-24242297IPR006447Myb domain, plants
PfamPF002491.4E-5244295IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010092Biological Processspecification of organ identity
GO:0010629Biological Processnegative regulation of gene expression
GO:0048449Biological Processfloral organ formation
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MKFDSKEFRL LDLNSSGFVP KSISDLLAEV SMIPDIPLKL SKLNDYVCVL EQEMKKIDGF  60
RRELPLCMLL LNDAIWKLKE EVVKLKKREV ETVVMEEFMP LKGNSDREDE RPKRKSADWT  120
DKKTWMSSAQ LWTTPIQYEN ERSDGAARWS LSDQARSFNK KLGGAFLPFK KPGGAVVTKT  180
EEEEEEEDYP LNGLSLSMPA LAEVGSDDLT NSKGKHVGVA SDDGTGVLSE GGSSSQTTQG  240
KKQRRCWSHD LHQNFVKALF ELGGAQAATP KHIREIMQVD GLTNDEVKSH LQKYRLHIRK  300
LMPSSSTSAS PNYEWLRRGE RSYLRKPSAK QSASPEGPLH LAGGGSAKGA SVTGGDSMEE  360
EEDRRSESCS WKDRHQKPTD *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00475DAPTransfer from AT4G37180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027078230.10.0transcription factor HHO5-like
TrEMBLA0A068U4D20.0A0A068U4D2_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84972229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.15e-48G2-like family protein