PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc07_g05740

Common Name

GSCOC_T00039854001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 293aa MW: 32148.4 Da PI: 7.4708

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc07_g05740	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.2	1.2e-42	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk lrrkC+++Cv+apyfp +qp+kf nvh++FGasnv kll++l + +reda++sl+yeAe r+rdPvyG+vg+i+ lqq+l+q++++l+ +k Cc07_g05740 7 PCAACKCLRRKCTQECVFAPYFPPDQPQKFINVHRVFGASNVAKLLNELGTGQREDAVNSLAYEAEYRLRDPVYGCVGLISILQQKLKQVQHDLNNAK 104 7**********************************************************************************************999 PP DUF260 99 ee 100 +e Cc07_g05740 105 KE 106 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.115	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.5E-42	7	104	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009954	Biological Process	proximal/distal pattern formation
GO:0009965	Biological Process	leaf morphogenesis
GO:0048441	Biological Process	petal development

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MSSSNSPCAA CKCLRRKCTQ ECVFAPYFPP DQPQKFINVH RVFGASNVAK LLNELGTGQR 60 EDAVNSLAYE AEYRLRDPVY GCVGLISILQ QKLKQVQHDL NNAKKELATY IGPSAMLPIF 120 QHPGFMQQHP NNPSASTVMP YAMQPMMGLP TGVAAPHGGP LIIRDAQQQQ QMYEAQQYAA 180 AVAARDQEMF RAYEQQQQQQ PPPQELMRFN SGFEGAGPAA ATAFNTMSCG AAMSPSLALG 240 SYEAFQLESQ LMLQQQQPQQ LPLQSHHQPQ AAQQQHPQRA KSEEGRSVGP SC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-46	4	110	8	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-46	4	110	8	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027076751.1	1e-158	LOB domain-containing protein 36-like isoform X1
Refseq	XP_027076752.1	1e-158	LOB domain-containing protein 36-like isoform X1
Swissprot	Q9FKZ3	9e-84	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A068U2S4	0.0	A0A068U2S4_COFCA; Uncharacterized protein
STRING	XP_009774046.1	1e-115	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	3e-82	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]