PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g05930
Common NameGSCOC_T00039881001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 586aa    MW: 65887.5 Da    PI: 8.5217
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g05930genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.21.1e-21219309199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  f+k l++s+v++  ++ lp +f+++h   +++++t++ledesg+++e+k+i +k++    l++GW++Fv a++L egD+++F+l+g ++f  +v v+r
  Cc07_g05930 219 FVKLLVRSHVGSCFWMGLPVPFCKTHL--PRKDTTVVLEDESGEQFEIKYISEKTG----LSAGWRKFVAAHKLVEGDVLIFQLIGPTTF--KVLVIR 308
                  89**********************995..45778****************666666....*************************97777..787777 PP

                  S CS
           B3  99 k 99 
                  +
  Cc07_g05930 309 A 309
                  5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.0E-24212310IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-25213310IPR015300DNA-binding pseudobarrel domain
CDDcd100178.15E-28217308No hitNo description
PROSITE profilePS5086314.522219310IPR003340B3 DNA binding domain
SMARTSM010193.3E-25219310IPR003340B3 DNA binding domain
PfamPF023625.3E-19219309IPR003340B3 DNA binding domain
PfamPF052664.0E-9458574IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MLVQGRHKDT GPSHQAPRKN SRGLCCLTHA PRHPHLPGFR FYLSSALPFP HSFLLCTDMR  60
LKIKPVQPSP SPEVQYQENL RVTADQEVLK TEAVEEEGQG CGWLIPDGNN PMISNSENNK  120
DNPPELSPTT TPVPQYLGKR KRKPKELIDE ISPIIVRRKK KQPSVSKSEQ EITDGGGKHV  180
SKQEKSKVDG SRNPVQVKPA TMIRAEEVQS SLGNEYPSFV KLLVRSHVGS CFWMGLPVPF  240
CKTHLPRKDT TVVLEDESGE QFEIKYISEK TGLSAGWRKF VAAHKLVEGD VLIFQLIGPT  300
TFKVLVIRAN DLTEVDGALS LLNLDTLAKQ SDAIVEGNVD LQNKKKKRPK SLPLTVVQKK  360
KQKAGLSRSI LPHLGHLEEQ SGNDSDEVAS EVLEGSKFSA DAVRFRDIKG FEEFRIMVNG  420
VCIDSELPEH VRRKYYELCC SKNVFLHERF LPGLHCKLAA GMIFEAVNTA EAIRACKVTT  480
SRKEFEKWEK SLRSFELLGM NVGFLRARMR RLLSMAFEGE GASEAKRYWE AKNERACTED  540
EIRNLEAKLV ELKATSEKYD AEIEALKSKA ESYEILFQEE VNAPW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139159RKRKPKELIDEISPIIVRRKK
2140160KRKPKELIDEISPIIVRRKKK
3343360KKKKRPKSLPLTVVQKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074565.10.0B3 domain-containing protein Os01g0234100-like
TrEMBLA0A068U4F20.0A0A068U4F2_COFCA; Uncharacterized protein
STRINGXP_009594239.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72042328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-39B3 family protein