PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc07_g06900

Common Name

GSCOC_T00040019001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 222aa MW: 23810 Da PI: 7.6427

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc07_g06900	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.9	4.9e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA r+ +Pv+Gavg++ ++++q++q+++e Cc07_g06900 2 SCNGCRVLRKGCSENCILRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPENQRPALFQSLLFEAAGRTVNPVNGAVGLLGTGNWQVCQAAVE 99 6***********************************************************************************************99 PP DUF260 94 lall 97 ++l+ Cc07_g06900 100 TVLR 103 9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.769	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.8E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MSCNGCRVLR KGCSENCILR PCLQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPENQR 60 PALFQSLLFE AAGRTVNPVN GAVGLLGTGN WQVCQAAVET VLRGGTLRAI PDHLVGGDSS 120 DLDETVSECT TDISSNGSKM QKRRRKPDEQ AVKVMQLADL DLSLTPGFEG GKYRCLLPEK 180 RRLGSPSMNS EESGTTTCFE SNTTDHQAGT GRGPKLLSLF N*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027075302.1	1e-158	LOB domain-containing protein 38-like
Swissprot	Q9SN23	1e-75	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A068U215	1e-162	A0A068U215_COFCA; Uncharacterized protein
STRING	XP_009801229.1	1e-108	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	6e-78	LOB domain-containing protein 38