PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g07330
Common NameGSCOC_T00040079001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bZIP
Protein Properties Length: 235aa    MW: 26629.8 Da    PI: 6.5189
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g07330genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.32.6e-11121178461
                  XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                   ++ rr+ +NRe+A+rsR RK++ +e+L++ v  L   N++L ++l   + +++ +++
  Cc07_g07330 121 ERKRRRMLSNRESAKRSRMRKQKHLENLRNQVSRLRIGNRELVNRLRVVTHHCQLVRT 178
                  46789999*************************************9999999986655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1709.9E-10114176No hitNo description
SMARTSM003382.7E-12118182IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.151120183IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.76E-10122173No hitNo description
PfamPF001702.2E-9122178IPR004827Basic-leucine zipper domain
CDDcd147021.16E-21123174No hitNo description
PROSITE patternPS000360125140IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MLSADCLFGN PFPAFESGFP PWDCQEPPFV FPQHDDPILS PLGELRVETQ EPVISNSGSE  60
TYTPPPLDPT GQAISISGSE NYDPTPLDSS SGSEEPNQNN KRPYPGSDDT TNPPVDSAAD  120
ERKRRRMLSN RESAKRSRMR KQKHLENLRN QVSRLRIGNR ELVNRLRVVT HHCQLVRTDN  180
DRLRSESVIL RQRLWDIRQV LLVRQLQQQL ATSAWPCNNL TPMNDETIPQ PLIT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121125RKRRR
2121142RKRRRMLSNRESAKRSRMRKQK
3134139KRSRMR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027179696.11e-155basic leucine zipper 25-like
TrEMBLA0A068U4U61e-170A0A068U4U6_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28202251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37730.19e-30basic leucine-zipper 7