PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g07500
Common NameGSCOC_T00040099001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 342aa    MW: 38370.1 Da    PI: 7.8093
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g07500genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.4e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l+ +++q+G+g +W + ++++g++R++k+c++rw++yl
      Cc07_g07500 14 RGPWSPEEDAKLKAYIEQYGTGgNWIALPQKIGLRRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding37.84.6e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
      Cc07_g07500  69 GGFSEEEDSIICSLYMNIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.251966IPR017930Myb domain
SuperFamilySSF466897.76E-2711109IPR009057Homeodomain-like
SMARTSM007175.3E-131364IPR001005SANT/Myb domain
PfamPF002492.0E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-241569IPR009057Homeodomain-like
CDDcd001673.90E-101662No hitNo description
PROSITE profilePS5129415.27767117IPR017930Myb domain
SMARTSM007171.2E-1067115IPR001005SANT/Myb domain
PfamPF002498.1E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2370117IPR009057Homeodomain-like
CDDcd001671.06E-771111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAKLKAYIE QYGTGGNWIA LPQKIGLRRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDSIIC SLYMNIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGK  120
QRKDQRTRAA SSLRQEMNRK KENFMTTEAI HVLHSHQLQQ PLAFPAVIPQ QQAHDVEDQA  180
VIIAGKLSAD DQQANGNSFN NHNSLYSCDI SFGEGQACEN PLSMASCSQQ CSPSSYYPIH  240
GVIANSNIPC YSSFLFHELN GMEYINNFHQ SDTLQSFSGT DTVNRSTITG TSPESTSWGD  300
TNSLVYSPIV SCYEICQQPI QQSCTLEKSS YFRMQQETVL Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027077879.10.0transcription factor RAX3-like
RefseqXP_027178946.10.0transcription factor RAX3-like
SwissprotQ9M2Y92e-87RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A068U2800.0A0A068U280_COFCA; Uncharacterized protein
STRINGEOX917831e-113(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.15e-83myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]