PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g07970
Common NameGSCOC_T00040159001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 222aa    MW: 25399.9 Da    PI: 9.5233
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g07970genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.51.5e-271058250
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 ri+n++ rqvtfskRrng+lKKA+EL vLCdaev v+ifsst klyey+
  Cc07_g07970 10 RIDNSTSRQVTFSKRRNGLLKKAKELAVLCDAEVGVVIFSSTSKLYEYA 58
                 8***********************************************8 PP
2K-box80.44.3e-27841691297
        K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                  ++ + +q+e++ L+++++nLq+ +R+l+Ge+L  Ls+k+Lq Le+qLe sl+ iR kK+++l+++i+el +k   +++en +L kk
  Cc07_g07970  84 SEVKFWQREATILRQQLHNLQEIHRQLMGEELYGLSVKDLQGLENQLEMSLRGIRMKKEQILTDEIRELHRKGCLIHQENVELYKK 169
                  67899******************************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.062161IPR002100Transcription factor, MADS-box
SMARTSM004326.8E-38160IPR002100Transcription factor, MADS-box
CDDcd002655.20E-43278No hitNo description
SuperFamilySSF554554.97E-32290IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-283859IPR002100Transcription factor, MADS-box
PfamPF014863.1E-2685169IPR002487Transcription factor, K-box
PROSITE profilePS5129714.60386177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAVLCD AEVGVVIFSS TSKLYEYANT  60
SMKSVLERYS KAKEERHQLL SPPSEVKFWQ REATILRQQL HNLQEIHRQL MGEELYGLSV  120
KDLQGLENQL EMSLRGIRMK KEQILTDEIR ELHRKGCLIH QENVELYKKA YSTTNSNATH  180
GNTITPYGFA ITEEQHAPIH LQLSQPESQN FVTSEGTSES R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-22174174MEF2C
5f28_B5e-22174174MEF2C
5f28_C5e-22174174MEF2C
5f28_D5e-22174174MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU3322800.0GU332280.1 Coffea arabica MADS-box protein AGL17 subfamily (C18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027076501.11e-162MADS-box transcription factor 23-like isoform X2
SwissprotQ6EP496e-97MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A068U3501e-162A0A068U350_COFCA; Uncharacterized protein
STRINGXP_009786108.11e-115(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6792056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.12e-96AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]