PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc07_g08030

Common Name

GSCOC_T00040165001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 97aa MW: 11465.4 Da PI: 10.319

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc07_g08030	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.2	3.3e-17	9	56	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll ++ +++G g W+ ++ + g++R++k+c++rw++yl Cc07_g08030 9 KGAWTEEEDILLRKCMEKYGEGKWHQVPVRAGLNRCRKSCRLRWLNYL 56 79*********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.681	4	60	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-22	5	58	IPR009057	Homeodomain-like
SMART	SM00717	3.6E-14	8	58	IPR001005	SANT/Myb domain
Pfam	PF00249	3.8E-16	9	56	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.05E-21	10	83	IPR009057	Homeodomain-like
CDD	cd00167	4.11E-10	11	56	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.2E-5	59	83	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 97 aa Download sequence Send to blast
MRNTDGLRKG AWTEEEDILL RKCMEKYGEG KWHQVPVRAG LNRCRKSCRL RWLNYLRPDI 60 KRGDFASDEV DLLIRLQKLL GNRPVLFSFS FFFLVF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027079539.1	9e-55	transcription factor MYB113-like
Swissprot	Q9FNV9	8e-41	MY113_ARATH; Transcription factor MYB113
TrEMBL	A0A068U536	5e-64	A0A068U536_COFCA; Uncharacterized protein
STRING	EOY03964	5e-45	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	2e-42	myb domain protein 113

Publications ? help Back to Top
Li T, et al. Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis. Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83 [PMID:25450360] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]