PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g08480
Common NameGSCOC_T00040222001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C3H
Protein Properties Length: 262aa    MW: 29520.4 Da    PI: 9.0927
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g08480genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH406.5e-13197221226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ktelC+ +++tG C++ ++C+FaHg
  Cc07_g08480 197 KTELCNKWQETGSCPFAGNCRFAHG 221
                  9***********************8 PP
2zf-CCCH21.63.9e-07234259126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ykte Cr  +++ +C+yG rC+F H+
  Cc07_g08480 234 YKTEVCRMVLAGDICPYGHRCHFRHS 259
                  9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.8E-15190228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-9192227IPR000571Zinc finger, CCCH-type
SMARTSM003569.4E-7195222IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023195223IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9197221IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-12229260IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-8230259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272233261IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5233260IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-4234259IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MTDEVVTPDR CHSDSSLILE YQQLYNRYAF CLANLRESIK EVQALGQDNE SLRLANADLV  60
HRLSLLSRAT IHNCLLSDFN RLRISGNDTP SPRLYSREAS PAPGPDVIQQ NRFQRRHLAE  120
RVSLPKSISI RSAGYLKFKP KSAGKYEAPT TQASSPNRVN SPPLPDSEKA RQRVYVAGGG  180
REEEASQFEV YNQGMSKTEL CNKWQETGSC PFAGNCRFAH GIMELRPVIR HPRYKTEVCR  240
MVLAGDICPY GHRCHFRHSL S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A8e-19197259567Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074162.10.0zinc finger CCCH domain-containing protein 15-like isoform X1
TrEMBLA0A068U5650.0A0A068U565_COFCA; Uncharacterized protein
STRINGXP_009783725.11e-106(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77842129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-64C3H family protein