PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g09150
Common NameGSCOC_T00040311001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 212aa    MW: 24402.4 Da    PI: 6.814
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g09150genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.7e-1956108456
                  -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  ++++++eq++ Le  F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Cc07_g09150  56 KRKLSQEQVNLLEINFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWK 108
                  4589************************************************9 PP
2HD-ZIP_I/II118.82.9e-3855146293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +kr+ls+eqv+lLE +F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++++ + e++rLe+ev +L+e+++e
  Cc07_g09150  55 RKRKLSQEQVNLLEINFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKSEHENTVVEKCRLETEVLKLKEQVSE 146
                  8***************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.53650110IPR001356Homeobox domain
SMARTSM003893.8E-1753114IPR001356Homeobox domain
SuperFamilySSF466893.25E-1754119IPR009057Homeodomain-like
CDDcd000868.14E-1555111No hitNo description
PfamPF000462.9E-1656108IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-1957117IPR009057Homeodomain-like
PRINTSPR000311.3E-58190IPR000047Helix-turn-helix motif
PROSITE patternPS00027085108IPR017970Homeobox, conserved site
PRINTSPR000311.3E-590106IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MTSSMSHQAD QQMVLISQYY PGIYSQLAPA EQGEVKSRRR RKKNRGGESS SSGVRKRKLS  60
QEQVNLLEIN FGSEHKLESE RKDRLASELG LDPRQVAVWF QNRRARWKSK KLEEEYSKLK  120
SEHENTVVEK CRLETEVLKL KEQVSEAEKE IQRLLERSDG VSSNSPSSSF SMEAIEPPFL  180
GEFGMEGFEN VFYVPETNYV NGLEWVNIYN M*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13856RRRKKNRGGESSSSGVRKR
24057RKKNRGGESSSSGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027073124.11e-152homeobox-leucine zipper protein ATHB-40
RefseqXP_027180055.11e-152homeobox-leucine zipper protein ATHB-40
SwissprotO232081e-76ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A068U2N91e-152A0A068U2N9_COFCA; Uncharacterized protein
STRINGSolyc02g085630.2.12e-97(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.14e-57homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]