PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g09220
Common NameGSCOC_T00040318001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 503aa    MW: 51869.1 Da    PI: 8.2148
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g09220genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-055779123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C+k F r  nL+ H r H
  Cc07_g09220 57 FVCEICNKGFQRDQNLQLHRRGH 79
                 89*******************88 PP
2zf-C2H211.20.0011133155123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k +  +s+ k H + +
  Cc07_g09220 133 WKCDKCSKKYAVQSDWKAHSKIC 155
                  58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.94E-75679No hitNo description
Gene3DG3DSA:3.30.160.601.7E-55679IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9495779IPR007087Zinc finger, C2H2
SMARTSM003550.0175779IPR015880Zinc finger, C2H2-like
PfamPF121718.0E-55779IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
SMARTSM0035525098128IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.4E-4121154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.94E-7128153No hitNo description
SMARTSM00355150133153IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MNDSTASGDA SASSSGNQAA APPTSSAKKK RNLPGMPDPD AEVIALSPKT LLATNRFVCE  60
ICNKGFQRDQ NLQLHRRGHN LPWKLRQRSS KEVKKRVYVC PELTCVHHDP SRALGDLTGI  120
KKHFCRKHGE KKWKCDKCSK KYAVQSDWKA HSKICGTREY KCDCGTLFSR RDSFITHRAF  180
CDALAEESAK AQTVEALPAP TADDEEPKLQ TLASSSPPPS VAAQPPPPAA LVSSALPVQN  240
PEGPENPKQS PAPPQILEET SVVTSLTGSC GSSSSSSSHG STSSSVFASL FASSTTSGSL  300
QSQTPEFTDL FRAVARPENA SEVVASSSTE PISLCLATSH GSSIFGTAGQ ERRQYAPAPQ  360
PAMSATALLQ KAAQIGAAAT NASLLRGFGI VSSASASSGQ QEWSGRGIES DSASLAAGLG  420
LGLPCDGGSS LKELMLGTPS VFGPKHTTLD LLGLGMAAGG GPSGGFSALM TSIGGGLDVA  480
AAAAATFGGS GEYSGKDMGR GS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-35129194368Zinc finger protein JACKDAW
5b3h_F5e-35129194368Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM6350750.0HM635075.1 Coffea canephora BAC 111O18 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074557.10.0zinc finger protein GAI-ASSOCIATED FACTOR 1-like
SwissprotQ9LVQ70.0IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A068U3D80.0A0A068U3D8_COFCA; Uncharacterized protein
STRINGVIT_04s0023g01430.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-105indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]