PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g09460
Common NameGSCOC_T00037239001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 631aa    MW: 68666.7 Da    PI: 4.4931
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g09460genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS357.22.5e-1092636303374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  ++L+e A+ ++ +d  +a + L rl+e +s++gdp++R+a+yf+eAL  r++r   +  k+ +  +t+    +e +  +k++++++P+ kf+hltaNq
  Cc07_g09460 263 KALIESAR-LAGSDPDNAVKSLIRLRESVSQHGDPTERVAFYFLEALYGRVSR---QPEKSPTIFDTT---PEELTLCYKALNDACPYSKFAHLTANQ 353
                  67888888.66779999************************************...333333444444...5688999******************** PP

         GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                  aIlea+e+ +++HiiDf+i qG+QW+aLlqaLa+Rp+g+p ++Ri g+ +p  g   + +l +tg+rL++fAe l+++fef++ v + +e+l+  +++
  Cc07_g09460 354 AILEATENGTKIHIIDFGILQGVQWAALLQALATRPAGKPeRIRISGIPAPLLGksPEAALLATGKRLSDFAELLDLNFEFEP-VLTPIEELTGASFQ 450
                  ************************************76666*********9988889999***********************.799*********** PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  v+p+E laVn++lql++lld++ + ++   + Lkl kslsP vv++ e e+++n+  Fl+rf +al+yysalf+sl+ +l r+s+er  vE  l+gr+
  Cc07_g09460 451 VDPDEILAVNFMLQLYNLLDDDNCGAE---AALKLAKSLSPSVVTLGEYEVSLNRVGFLARFKNALKYYSALFESLDPNLTRDSDERLRVESLLFGRR 545
                  *******************99999988...9******************************************************************* PP

         GRAS 294 ivnvvacegae..rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                  i  vv  e++   rr r+e +e+Wr  +e+aGF+pv+ls++a++qa  ll  ++ s+ y++ ++   ++ l W+d pL++vS+Wr
  Cc07_g09460 546 IAGVVGPEEETgtRRDRMEDKEQWRILMESAGFEPVTLSHYAMSQAGILLWSYNySQSYKLVDSPPGFLsLAWNDLPLLTVSSWR 630
                  *****99887667*****************************************99****9988766666**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.328235608IPR005202Transcription factor GRAS
PfamPF035148.7E-107263630IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QQQQQQQFLG INPFCLSPWS TTTHSSLTTS  60
PALGYGLTGP GFADPFQVPG GCPDSAEPGF QFPPLDHHST GFRFPDFCGA PGGEFDSDEW  120
MESLMGGGDS TESSNLHSGC DAWQTGSDFN ATTIYGADPF AACPSRLSIG SSPPSSDLNR  180
VIFSETSQKS SAPPDPPQTQ PSSQWVPPSS SPPSSPLHPT AKDSSKQQQQ QQQQQNSASQ  240
NDAAAACTSS TSPDASPSKP LLKALIESAR LAGSDPDNAV KSLIRLRESV SQHGDPTERV  300
AFYFLEALYG RVSRQPEKSP TIFDTTPEEL TLCYKALNDA CPYSKFAHLT ANQAILEATE  360
NGTKIHIIDF GILQGVQWAA LLQALATRPA GKPERIRISG IPAPLLGKSP EAALLATGKR  420
LSDFAELLDL NFEFEPVLTP IEELTGASFQ VDPDEILAVN FMLQLYNLLD DDNCGAEAAL  480
KLAKSLSPSV VTLGEYEVSL NRVGFLARFK NALKYYSALF ESLDPNLTRD SDERLRVESL  540
LFGRRIAGVV GPEEETGTRR DRMEDKEQWR ILMESAGFEP VTLSHYAMSQ AGILLWSYNY  600
SQSYKLVDSP PGFLSLAWND LPLLTVSSWR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1502586301375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075560.10.0SCARECROW-LIKE protein 7-like
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A068U3340.0A0A068U334_COFCA; Uncharacterized protein
STRINGSolyc02g085340.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA89052429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-172GRAS family protein