PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g09560
Common NameGSCOC_T00037225001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 88aa    MW: 9666.83 Da    PI: 7.3518
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g09560genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.5e-081560346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT+e  + +  a + + ++   +W+ +a+ +g g+t +++k  +q 
      Cc07_g09560 15 TWTKEQNKVFETALAIYDKDtpdRWHNVAKAVG-GKTVEEVKMQYQL 60
                     7********************************.********99996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.0E-71264IPR001005SANT/Myb domain
PROSITE profilePS500906.3191462IPR017877Myb-like domain
SuperFamilySSF466893.9E-131469IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-41459IPR009057Homeodomain-like
PfamPF002491.1E-51559IPR001005SANT/Myb domain
CDDcd001675.58E-71562No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MASSSPSCSF NSNSTWTKEQ NKVFETALAI YDKDTPDRWH NVAKAVGGKT VEEVKMQYQL  60
LVNDVALIEA DKFPLPPYKS SPSRNAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-25781276RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020690181.12e-34protein RADIALIS-like 3 isoform X1
SwissprotQ1A1733e-30RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A068U3263e-58A0A068U326_COFCA; Uncharacterized protein
STRINGEOY147712e-31(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-31RAD-like 6