PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g09640
Common NameGSCOC_T00037216001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 81aa    MW: 9213.28 Da    PI: 10.1021
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g09640genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.91.5e-101154345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+ E +l+ +a +++ ++   +W  +ar +g  +t++++k ++q
      Cc07_g09640 11 SWTAKENKLFEKALAKYDKDtadRWQNVARAVG--KTEEEVKRHYQ 54
                     7*******************************8..9*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.796761IPR017884SANT domain
SMARTSM007171.9E-8859IPR001005SANT/Myb domain
SuperFamilySSF466899.36E-141065IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-61163IPR009057Homeodomain-like
PfamPF002493.9E-81154IPR001005SANT/Myb domain
CDDcd001672.04E-51254No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MASNSLSSSS SWTAKENKLF EKALAKYDKD TADRWQNVAR AVGKTEEEVK RHYQILVEDL  60
KHIESGNVPF PNYRSGRNKR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-32175175RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074356.11e-53protein RADIALIS-like 3
RefseqXP_027179780.11e-53protein RADIALIS-like 3
SwissprotQ1A1731e-32RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A068U0E43e-52A0A068U0E4_COFCA; Uncharacterized protein
STRINGEOX980084e-36(Theobroma cacao)
STRINGXP_010029788.12e-36(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.15e-31RAD-like 1