PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g10250
Common NameGSCOC_T00037142001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family SRS
Protein Properties Length: 386aa    MW: 41407.9 Da    PI: 7.6641
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g10250genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702210.93.1e-651323013154
       DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel....................ks 80 
                   g++sCqdCGnqakkdCah+RCRtCCksrgf+C+thvkstWvpaakrrerqqqla++++++++++++a++++++++                    ++
  Cc07_g10250 132 GGGISCQDCGNQAKKDCAHMRCRTCCKSRGFQCSTHVKSTWVPAAKRRERQQQLASLQQQQQQQQEQAQENQNQQQqqlqlhhghshrgenskrqrEN 229
                  5789****************************************************999988887444443333331233333333333333222233 PP

       DUF702  81 kkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                  +++s+l +t+l+s++  + +e+ ++P+evs++avfrcvrvss+d++e+++aYqtav++gGhvfkGiLydqGle+
  Cc07_g10250 230 RASSSLVCTRLPSNS--SGFEVGHFPAEVSTSAVFRCVRVSSIDENEDQFAYQTAVNVGGHVFKGILYDQGLES 301
                  444444445544443..2355555***********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051427.8E-66134300IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.9E-27136178IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.7E-27251299IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MAGFFSLGGG GSSRGGSSSN QESSSHNNTT TNNQQHQPTE INPENWFLYR SDEYKGFEIW  60
HPQPQHQYHQ PHNQPEHHHF RHHNPALQDF YPSAGGGLDF GPSSSHRGGG GGLNISSDEP  120
SRSAFVMMRS SGGGISCQDC GNQAKKDCAH MRCRTCCKSR GFQCSTHVKS TWVPAAKRRE  180
RQQQLASLQQ QQQQQQEQAQ ENQNQQQQQL QLHHGHSHRG ENSKRQRENR ASSSLVCTRL  240
PSNSSGFEVG HFPAEVSTSA VFRCVRVSSI DENEDQFAYQ TAVNVGGHVF KGILYDQGLE  300
SQYMTTESSS GGGSGSTTGV QQLNLITGTA ATATSTGTTT VSGGGGGGGG GGGGAAGSPF  360
LDPSMYPAPL NSYMAGTQFF PPPRS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269|PubMed:24142382, ECO:0000269|PubMed:24884371}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027073964.10.0protein SHI RELATED SEQUENCE 1
SwissprotK4B6C94e-99EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBLA0A068U1960.0A0A068U196_COFCA; Uncharacterized protein
STRINGEOX909421e-116(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67824110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.12e-69Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]