PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g10470
Common NameGSCOC_T00037112001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family DBB
Protein Properties Length: 186aa    MW: 20397.2 Da    PI: 6.291
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g10470genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.11.5e-07433534
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                  C+ +e+  ++lfC  ++  lC++C ++ H
  Cc07_g10470  4 LCDVCESAAAILFCAADEAALCRSCDDKVH 33
                 7*************************9998 PP
2zf-B_box27.85.3e-095286236
     zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg 36
                 + + C+ +e+ ++ ++Ce +++ lC +C +  H g
  Cc07_g10470 52 DVPQCDICENAPAFFYCEVDGSSLCLQCDMIAHVG 86
                 5689**************************99955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.054147IPR000315B-box-type zinc finger
SMARTSM003369.9E-8147IPR000315B-box-type zinc finger
CDDcd000215.61E-6345No hitNo description
PfamPF006434.0E-6342IPR000315B-box-type zinc finger
SuperFamilySSF578454.58E-54891No hitNo description
PROSITE profilePS501199.035196IPR000315B-box-type zinc finger
SMARTSM003366.6E-95196IPR000315B-box-type zinc finger
PfamPF006433.6E-75385IPR000315B-box-type zinc finger
CDDcd000213.55E-65484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MRTLCDVCES AAAILFCAAD EAALCRSCDD KVHMCNKLAS RHVRVGLANP SDVPQCDICE  60
NAPAFFYCEV DGSSLCLQCD MIAHVGGKRT HARYLLLRQR VEFPGDKPAR LEEPATLTLD  120
QGENMREYGP SYKLVVGDKH QNHKVPSIPI SDGSTDGHAK VETQMIDLNM KPNRLHGQAS  180
NNQEL*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027179448.11e-135B-box zinc finger protein 19-like isoform X1
SwissprotC0SVM58e-74BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A068U0R81e-136A0A068U0R8_COFCA; Uncharacterized protein
STRINGEOX909021e-102(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31752340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.13e-76DBB family protein