PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g12090
Common NameGSCOC_T00036922001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 191aa    MW: 21815.7 Da    PI: 8.0572
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g12090genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.11.1e-093076347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      WT eE++l+ +a + +  +    +++Ia +++ g+t +q+k ++q +
      Cc07_g12090 30 EWTFEEEKLFENALAVYDLNswdLFEKIAIKVP-GKTIEQIKQHFQLL 76
                     7*******************6666689******.***********965 PP
2Myb_DNA-binding47.44.3e-15122166347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rWT+eE+e ++ + k++G+g+W++I+r   +++t+ q+ s+ qky
      Cc07_g12090 122 RWTKEEHENFLLGLKKYGKGDWRSISRNSVLTKTPTQVASHAQKY 166
                      9*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.5162681IPR017884SANT domain
Gene3DG3DSA:1.10.10.606.7E-52774IPR009057Homeodomain-like
SMARTSM007172.3E-92779IPR001005SANT/Myb domain
SuperFamilySSF466894.71E-102986IPR009057Homeodomain-like
CDDcd001672.11E-93077No hitNo description
PfamPF002491.1E-73075IPR001005SANT/Myb domain
PROSITE profilePS5129420.096115171IPR017930Myb domain
SuperFamilySSF466896.43E-17116172IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-16118169IPR006447Myb domain, plants
SMARTSM007171.7E-11119169IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-11119165IPR009057Homeodomain-like
CDDcd001678.68E-10122167No hitNo description
PfamPF002492.5E-11122166IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MELSNLSCYP FNEDAILSFT CSPARSKDSE WTFEEEKLFE NALAVYDLNS WDLFEKIAIK  60
VPGKTIEQIK QHFQLLVEDV NFIETWSGPL PNCRTTNNVE PESTPNSTLT SVENRQKKKG  120
TRWTKEEHEN FLLGLKKYGK GDWRSISRNS VLTKTPTQVA SHAQKYFIRL AKLSTTASNP  180
LFSISFSRQI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-162598578RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027179040.11e-130transcription factor SRM1-like
SwissprotQ9FNN69e-43SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A068TZR71e-138A0A068TZR7_COFCA; Uncharacterized protein
STRINGXP_007153178.11e-47(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52342032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.14e-45MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]