PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g12100
Common NameGSCOC_T00036921001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 273aa    MW: 30869.7 Da    PI: 4.5592
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g12100genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.52.2e-11107151347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rWT+eE++ ++ + k++G g+Wk I+++  ++R + q+ s+ qky
      Cc07_g12100 107 RWTEEEHLMFLVGLKRFGRGDWKNISKHCVTTRKPSQVASHGQKY 151
                      8****************************************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.089138IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.7E-899155IPR009057Homeodomain-like
PROSITE profilePS5129412.971100156IPR017930Myb domain
SuperFamilySSF466895.74E-15101157IPR009057Homeodomain-like
SMARTSM007174.3E-7104154IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.3E-13104155IPR006447Myb domain, plants
CDDcd001676.16E-8107152No hitNo description
PfamPF002491.2E-8107151IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MEWSPEDDKL LENALAELDS SSPNSCEDGA DKIPWKSVDE SEELYQDHQA LARDTNLTEA  60
DNYYPMPLHT NDHGVENPGA LKSGEETGSS SRKKQATKND QRQKTIRWTE EEHLMFLVGL  120
KRFGRGDWKN ISKHCVTTRK PSQVASHGQK YFRRQKSSTP EDKRRSSIND IIAIDPDFVV  180
PHYTFPSLEQ ETPSYSTSTG QPEIALPSEP DRSYDVEELL NSTEASTFQL EEFPPVDEAF  240
FEDPSFYFLP PDAAYPGARI NKENHGQGPK NQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075651.10.0transcription factor DIVARICATA-like
TrEMBLA0A068U0S80.0A0A068U0S8_COFCA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.13e-33MYB family protein