PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g12570
Common NameGSCOC_T00036856001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 393aa    MW: 43444.2 Da    PI: 4.9861
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g12570genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.56.1e-13101145347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+ l++++  ++G g+W++I+r     Rt+ q+ s+ qky
      Cc07_g12570 101 PWSKEEHRLFLQGLDKYGRGDWRSISRLCVRSRTPTQVASHAQKY 145
                      8**************************9999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.7E-51364IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-51658IPR009057Homeodomain-like
SuperFamilySSF466893.24E-91769IPR009057Homeodomain-like
CDDcd001671.32E-71762No hitNo description
PROSITE profilePS500906.9111762IPR017877Myb-like domain
PROSITE profilePS5129419.18494150IPR017930Myb domain
SuperFamilySSF466893.73E-1697148IPR009057Homeodomain-like
TIGRFAMsTIGR015575.6E-1697148IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.1E-1198147IPR009057Homeodomain-like
SMARTSM007173.3E-1198148IPR001005SANT/Myb domain
CDDcd001678.56E-11101146No hitNo description
PfamPF002491.3E-10101145IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MVCNQKIGTS TCNNSLWAKE EDQAFENALA IYSYDSNLWE KIVAAVPGRT VEEIKIHYEV  60
LVADVNAIEL GLVPLPHYAD SFMNYRGISM RSNRDHKKGR PWSKEEHRLF LQGLDKYGRG  120
DWRSISRLCV RSRTPTQVAS HAQKYFKRMV VVDKKMMSST HDVTILDGGK IVTQQVQTTQ  180
LVAGASGGSF IDTGLYPSEN NKVGDRYLHG SLIDSQCNII SHVPNTEDIS AGINLLESLL  240
DSLADTLTPQ GPSSQKISES TGVHLCTLVN VNQHMPTYGE VVIEDTITPA DLEIFNSLFI  300
FQHNMSNSQG PIMGEVIGTV NMLNFEALPF PAHLDFDVHA PPTASQLTLE LLPSVRIQGS  360
FPYPGSLMFE MDSPNFVAFL CDEPDDMATP AY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-15171001188RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A068U0B20.0A0A068U0B2_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1932323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-46MYB family protein