PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g12880
Common NameGSCOC_T00036820001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 255aa    MW: 29420.6 Da    PI: 7.3384
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g12880genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.47.2e-1525991598
                 -EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3 15 rlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                  + +p +f+ ++ ggk  ++ + +l+    ++W+v++    +++  +l++GW+ F+ +n+L++gDfvvF+++g++ f   v vf+
  Cc07_g12880 25 GVKIPASFL-NYlGGKI-SENQAVLRRGGVKEWRVEI----SDQ--WLREGWRAFAVENNLQVGDFVVFEHEGNMVF--EVLVFD 99
                 5789*****.6655553.445799999999*******....443..5*************************99999..777776 PP
2B356.74.4e-181612421095
                  HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  +l  +rl +p++fa e+g+   ++  ++l+d+s rsW++k+  + +s+   ++ GWk+F+ka+gLkegD +v++l+++ ++ +v+ 
  Cc07_g12880 161 NLLYHRLNIPRDFAMENGLF-GRECNIKLRDQSQRSWSLKI--KSSSDCASIQCGWKSFAKAQGLKEGDEFVLELTEN-GEAPVFN 242
                  455689***********554.33458***************..8888889************************9875.4446665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-227103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-217103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.23811101IPR003340B3 DNA binding domain
CDDcd100177.64E-181299No hitNo description
SMARTSM010193.0E-1614101IPR003340B3 DNA binding domain
PfamPF023625.5E-122497IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-20147243IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-19149243IPR015300DNA-binding pseudobarrel domain
CDDcd100173.25E-17151244No hitNo description
SMARTSM010192.1E-15152247IPR003340B3 DNA binding domain
PROSITE profilePS5086313.761152246IPR003340B3 DNA binding domain
PfamPF023621.3E-15156242IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MSMRTRIQPE KPHFFKPILP GFIDGVKIPA SFLNYLGGKI SENQAVLRRG GVKEWRVEIS  60
DQWLREGWRA FAVENNLQVG DFVVFEHEGN MVFEVLVFDP SHCERKYASI DDEKKCSQKF  120
KAAEIPRSKK VKLELSDDQE EPDSTDQICR PYFIFTVKPI NLLYHRLNIP RDFAMENGLF  180
GRECNIKLRD QSQRSWSLKI KSSSDCASIQ CGWKSFAKAQ GLKEGDEFVL ELTENGEAPV  240
FNFYGKLFCY YYVS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075128.11e-179B3 domain-containing protein REM14-like isoform X2
TrEMBLA0A068TZN90.0A0A068TZN9_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.13e-40B3 family protein