PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g12890
Common NameGSCOC_T00036818001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 204aa    MW: 23547.3 Da    PI: 10.0505
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g12890genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.49.7e-173781796
                 E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                 +lp kfa+++++++ +s +l+l+d++ rsW  +l  + +++r+ ++ G  eF  an+LkegD++ F+l++ +++++v+ +
  Cc07_g12890  3 YLPMKFARSNDLSN-RSCKLILKDPKKRSWHAEL--NSRGSRVCISFGLDEFFTANDLKEGDTCSFELVE-NGETPVINF 78
                 79********9885.677****************..999999*************************998.566677765 PP
2B362.95.2e-20101189395
                  EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                    ++++++ k++ l lp kfa+ +g+ k ++ +++++d + r W++kl  + +++r+vl++GW++F +angLk+gD   F+ ++ +++++vv 
  Cc07_g12890 101 VSTIKPYNIKRCVLHLPVKFAKPNGLTKLKG-EMIVKDDRQRLWKIKL--KDRGDRVVLSSGWSHFSRANGLKVGDRYKFEIIK-KGKRPVVN 189
                  567899******************9998776.9***************..9999***************************998.77778886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010194.9E-7182IPR003340B3 DNA binding domain
PROSITE profilePS5086312.407181IPR003340B3 DNA binding domain
PfamPF023629.0E-15378IPR003340B3 DNA binding domain
CDDcd100171.84E-15379No hitNo description
Gene3DG3DSA:2.40.330.103.4E-16378IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-16384IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-2294190IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-2095191IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.8E-1699194IPR003340B3 DNA binding domain
CDDcd100172.36E-1799192No hitNo description
PROSITE profilePS5086313.47999193IPR003340B3 DNA binding domain
PfamPF023627.4E-18100190IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MQYLPMKFAR SNDLSNRSCK LILKDPKKRS WHAELNSRGS RVCISFGLDE FFTANDLKEG  60
DTCSFELVEN GETPVINFLT HLTKDDQPPP QPATDNHSYF VSTIKPYNIK RCVLHLPVKF  120
AKPNGLTKLK GEMIVKDDRQ RLWKIKLKDR GDRVVLSSGW SHFSRANGLK VGDRYKFEII  180
KKGKRPVVNF HCEYFFPVYF MPC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075124.11e-136B3 domain-containing protein REM14-like isoform X1
RefseqXP_027075125.11e-136B3 domain-containing protein REM14-like isoform X1
RefseqXP_027075126.11e-136B3 domain-containing protein REM14-like isoform X1
TrEMBLA0A068TZK21e-150A0A068TZK2_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.16e-25B3 family protein