PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc07_g12980

Common Name

GSCOC_T00036806001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 371aa MW: 42255 Da PI: 8.3022

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc07_g12980	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.8	2.1e-06	54	76	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+++F r nL+ H r+H Cc07_g12980 54 YVCEICNQCFQREQNLQMHRRRH 76 9*********************9 PP
2	zf-C2H2	14.2	0.00013	131	153	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H + + Cc07_g12980 131 WVCEKCSKGYAVQSDYKAHVKIC 153 58*****************9987 PP
3	zf-C2H2	11	0.0013	161	179	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr + + H+ t+ Cc07_g12980 161 DCGRVFSRVEAFIEHQDTC 179 9***************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.25E-5	53	76	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.4E-4	54	76	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.053	54	76	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0043	54	76	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	56	76	IPR007087	Zinc finger, C2H2
SMART	SM00355	160	95	125	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.8E-4	122	152	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.25E-5	126	151	No hit	No description
SMART	SM00355	75	131	158	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MLACQSFSLP SSEIFACPND GLLTKKKRRP AGTPDPDAEV VYLSPEMLME SDRYVCEICN 60 QCFQREQNLQ MHRRRHKVPW KLLKKDKQEV KKRVYVCPEP TCLHHDPCHA LGDLVGIKKH 120 FRRKHSNNKQ WVCEKCSKGY AVQSDYKAHV KICGTRGHSC DCGRVFSRVE AFIEHQDTCK 180 ARMTDYMCQG IPEKPAADPF HHSTLSPDFL GDRSFHNNLS EMPRQKVLDS AFDGQNNNGT 240 VTGFCHNLEL ELFSSSNSSL SGVNFSNTGS VASEQNHHTS QSNIAKEEKA LAEEKRHQAK 300 CLIEMAKQEM TRARTIREQA FYEFNAAELM KDCATRHISS NFVQITCNAC RRDFIQEKPS 360 QLRVPSHLPF *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MLACQSFSLP SSEIFACPND GLLTKKKRRP AGTPDPDAEV VYLSPEMLME SDRYVCEICN  60
QCFQREQNLQ MHRRRHKVPW KLLKKDKQEV KKRVYVCPEP TCLHHDPCHA LGDLVGIKKH  120
FRRKHSNNKQ WVCEKCSKGY AVQSDYKAHV KICGTRGHSC DCGRVFSRVE AFIEHQDTCK  180
ARMTDYMCQG IPEKPAADPF HHSTLSPDFL GDRSFHNNLS EMPRQKVLDS AFDGQNNNGT  240
VTGFCHNLEL ELFSSSNSSL SGVNFSNTGS VASEQNHHTS QSNIAKEEKA LAEEKRHQAK  300
CLIEMAKQEM TRARTIREQA FYEFNAAELM KDCATRHISS NFVQITCNAC RRDFIQEKPS  360
QLRVPSHLPF *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-17	129	181	5	57	Zinc finger protein JACKDAW
5b3h_F	4e-17	129	181	5	57	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	28	KKKRR
2	24	29	KKKRRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:21556057, ECO:0000269\|PubMed:24039602}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027073843.1	0.0	zinc finger protein SHOOT GRAVITROPISM 5-like
Swissprot	Q9C9X7	1e-115	IDD14_ARATH; Protein indeterminate-domain 14
TrEMBL	A0A068TZN2	0.0	A0A068TZN2_COFCA; Uncharacterized protein
STRING	POPTR_0008s13980.1	1e-132	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1022	24	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-102	indeterminate(ID)-domain 14

Publications ? help Back to Top
Arendsee ZW,Li L,Wurtele ES Coming of age: orphan genes in plants. Trends Plant Sci., 2014. 19(11): p. 698-708 [PMID:25151064] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]