PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g15620
Common NameGSCOC_T00036454001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 218aa    MW: 25679.1 Da    PI: 6.8758
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g15620genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.81.6e-241058250
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 ri n++nrqvtfskRrngilKKA+EL vLCd+++a+ ++s++g++  +s
  Cc07_g15620 10 RIVNNTNRQVTFSKRRNGILKKAYELAVLCDIDIALFMVSPSGRISYFS 58
                 899****************************************998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.52161IPR002100Transcription factor, MADS-box
SMARTSM004325.5E-32160IPR002100Transcription factor, MADS-box
CDDcd002661.24E-25279No hitNo description
SuperFamilySSF554551.96E-25281IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-21323IPR002100Transcription factor, MADS-box
PfamPF003193.8E-211055IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-213859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MGRVKLPISR IVNNTNRQVT FSKRRNGILK KAYELAVLCD IDIALFMVSP SGRISYFSGT  60
KRIEDVMLQY FNLKDEERES DHDSEGIVHD KEVRQILICN DTYKFGRERT RSSNSNEYKQ  120
EIMNLQHQLE IAKEQLRQSS EERLSEALNL VEKRKRHLLT DHSSSYQETV EVSPQLFVVW  180
LVVVFFVYDS ACFWIPYRDI DDHFFLWIQS TSFNQCH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-16170169Myocyte-specific enhancer factor 2B
1tqe_Q2e-16170169Myocyte-specific enhancer factor 2B
1tqe_R2e-16170169Myocyte-specific enhancer factor 2B
1tqe_S2e-16170169Myocyte-specific enhancer factor 2B
6c9l_A2e-16170169Myocyte-specific enhancer factor 2B
6c9l_B2e-16170169Myocyte-specific enhancer factor 2B
6c9l_C2e-16170169Myocyte-specific enhancer factor 2B
6c9l_D2e-16170169Myocyte-specific enhancer factor 2B
6c9l_E2e-16170169Myocyte-specific enhancer factor 2B
6c9l_F2e-16170169Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027177611.12e-94agamous-like MADS-box protein AGL104
TrEMBLA0A068TZB51e-160A0A068TZB5_COFCA; Uncharacterized protein
STRINGXP_010680585.11e-48(Beta vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61831925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.16e-43AGAMOUS-like 104