PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g18360
Common NameGSCOC_T00018762001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NAC
Protein Properties Length: 501aa    MW: 54757.5 Da    PI: 4.5353
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g18360genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.76.8e-5161331128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  lppGfrFhPtd elv++yLk+kv gkk++l e+i+e++iyk+ PwdLp k ++k+++ ewyfF++r++kya+g+r nr+t++gyWk+tgkd++v+  +
  Cc07_g18360   6 LPPGFRFHPTDVELVMYYLKRKVMGKKIPL-EAISELNIYKFSPWDLPdKsCLKSKDLEWYFFCPRERKYASGSRMNRSTETGYWKTTGKDRPVTY-N 101
                  79****************************.89**************96347788888**************************************.9 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  ++ vg+ ktLvf+kg ap+g++tdWv+heyr+
  Cc07_g18360 102 KNSVGMVKTLVFHKGCAPRGQRTDWVIHEYRI 133
                  999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-593156IPR003441NAC domain
PROSITE profilePS5100555.8226156IPR003441NAC domain
PfamPF023651.8E-267133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MVRTSLPPGF RFHPTDVELV MYYLKRKVMG KKIPLEAISE LNIYKFSPWD LPDKSCLKSK  60
DLEWYFFCPR ERKYASGSRM NRSTETGYWK TTGKDRPVTY NKNSVGMVKT LVFHKGCAPR  120
GQRTDWVIHE YRIEDRNLAD MGDAQDAYVL CKLFHKSGPG PKNGASYGAP FREEDWDDDE  180
EIPVDSLLPG GPSTVEPVQP ENDNSSAAIS LVDLGNAPLM RPNEPGPSFV QPSKDTVLSN  240
GQNSSMVTRV VDAGSASGWS LSEAGLTSAS HSGNGMDMDP PDDDILHLLA AFSEDSPLLP  300
TVNGNIELGD LGQGRAAEAI PHSDGGDLFG GLEDLSNLAE LNGGGLNLFD NYQIGYTTNN  360
MRLQEDSGFL ELNDLDAPLN FTAQSCGPEQ MHTGGLYRPS NSSGSEHVFA GSLCTEYNTS  420
NQTWNGDNIP GYAQHPTDLH HLLVVPDASD IQGNSTSIFP MGNVYDSTNA AYNLDFTTNR  480
PLEDIRNAAG NQERGRSHNF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-48515714169Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074606.10.0NAC domain-containing protein 82-like
TrEMBLA0A068U8B80.0A0A068U8B8_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA60502334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.13e-89NAC domain containing protein 103