PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g19830
Common NameGSCOC_T00033881001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Nin-like
Protein Properties Length: 176aa    MW: 20397.6 Da    PI: 9.655
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g19830genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK62.38.2e-201461552
       RWP-RK  5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
                 i+ e+l+++   +++dAAk++gv+ ++LKriCR+yGI+RWP Rk +++
  Cc07_g19830 14 ITREVLEQNSTRKLEDAAKNIGVSRSTLKRICREYGIRRWPPRKERKV 61
                 899*****************************************7775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151913.481181IPR003035RWP-RK domain
PfamPF020421.1E-161461IPR003035RWP-RK domain
Gene3DG3DSA:1.10.10.603.1E-42051IPR009057Homeodomain-like
SuperFamilySSF542772.55E-1691174No hitNo description
SMARTSM006664.8E-1295175IPR000270PB1 domain
PROSITE profilePS5174515.39695175IPR000270PB1 domain
PfamPF005643.6E-1598174IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2402.6E-1698174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MQEPSCTLKS DLGITREVLE QNSTRKLEDA AKNIGVSRST LKRICREYGI RRWPPRKERK  60
VSQVFVKQKV VHPPTENIEE HHRLYATRLE DDGSMWVIKA KYQEDKIKFE LSSSASKIDL  120
EKKIAQRLNL SLGSFKIKYQ DELNDWILIT CDTDLSFCMK TLHKLGRTTI EMLVS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074250.11e-119protein NLP6-like
TrEMBLA0A068UT071e-126A0A068UT07_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4897426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43500.28e-16Nin-like family protein