PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g20140
Common NameGSCOC_T00033937001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 354aa    MW: 40458.1 Da    PI: 8.9807
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g20140genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.34.9e-12371141598
                  -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   + +p  f++++g +   +k + l+ ++g sW v l   +++ +++l kGWk+F++   +++  fvvF++d++s f  +v +f+
  Cc07_g20140  37 GIKIPTAFMRKYGDS--LEKVVWLKVPNGASWPVDL--LQTDAGTWLDKGWKDFAEYYSIEQCYFVVFRYDEKSLF--NVIIFD 114
                  379*********977..6779***************..999999**************************986777..776665 PP
2B3581.8e-18257352199
                  EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  f+  + ps+v++++ l+l  +fa +h  ++k ++  l l+ ++g ++W v +    + +   +t+GW++Fv +n+L +gD++vF+l++  ++++ +++
  Cc07_g20140 257 FIRFMQPSYVTSRCALSLRLSFALKHlTKDKYCN--LDLRVSEGtKTWPVMC--FIYANNAKITQGWEKFVLDNNLVVGDVCVFELIR-GSRTFIITI 349
                  677899********************86666675..777775555*******..555555569************************8.555569999 PP

                  E-S CS
           B3  97 frk 99 
                  +r+
  Cc07_g20140 350 YRR 352
                  987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-2021116IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-1922115IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.03923116IPR003340B3 DNA binding domain
CDDcd100172.28E-1524114No hitNo description
SMARTSM010192.9E-826116IPR003340B3 DNA binding domain
PfamPF023629.4E-1037113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-21249352IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-20250352IPR015300DNA-binding pseudobarrel domain
CDDcd100173.79E-23255351No hitNo description
PfamPF023621.2E-16257353IPR003340B3 DNA binding domain
PROSITE profilePS5086313.14257353IPR003340B3 DNA binding domain
SMARTSM010193.3E-15257353IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
METNQRCNKR SYHQTLNHQA KKSPHFFKVV FSPVDQGIKI PTAFMRKYGD SLEKVVWLKV  60
PNGASWPVDL LQTDAGTWLD KGWKDFAEYY SIEQCYFVVF RYDEKSLFNV IIFDLTASEI  120
EYPLEATQDS GVIHGNEGRL PRRRRPSPMR NSDEMQKASD DDSIEILEEI PAAACHAKQG  180
GKSARIGEEK ASACIKKDNV EKLDANVNPS QRATTKESFK TTLSTQSSNP KIKTVLDKDK  240
FSSYQRAEAF TSENPFFIRF MQPSYVTSRC ALSLRLSFAL KHLTKDKYCN LDLRVSEGTK  300
TWPVMCFIYA NNAKITQGWE KFVLDNNLVV GDVCVFELIR GSRTFIITIY RRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A7e-2022635318143B3 domain-containing transcription factor VRN1
4i1k_B7e-2022635318143B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027073190.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A068UTF60.0A0A068UTF6_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-44B3 family protein