PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g20810
Common NameGSCOC_T00027275001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 201aa    MW: 22313.5 Da    PI: 6.3636
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g20810genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.81.1e-123884252
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkk 52
                 +++GVr+++  g+WvAeIr p     +  ++ +lg+f +aeeAa+a ++   +
  Cc07_g20810 38 HFRGVRQRS-EGKWVAEIRNP-----HlgRTDWLGTFTSAEEAARAFDRKCIQ 84
                 69****999.7*********8.....667*****************9987655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.55E-173896IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.3E-253896IPR001471AP2/ERF domain
CDDcd000181.62E-223897No hitNo description
SMARTSM003803.3E-2538101IPR001471AP2/ERF domain
PROSITE profilePS5103218.7293895IPR001471AP2/ERF domain
PfamPF008477.1E-73885IPR001471AP2/ERF domain
PRINTSPR003671.6E-63950IPR001471AP2/ERF domain
PRINTSPR003671.6E-66177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MMEDKDHDQS RSNDKKQKQK KKKKNRDREV DGEKRVVHFR GVRQRSEGKW VAEIRNPHLG  60
RTDWLGTFTS AEEAARAFDR KCIQYKGDRA KTNFPSSDYA NANDDQSSSL QQQQQQQHAL  120
PPPAAAPPLS VNAPVGHASP LLTNTAVAGA TATNSTATAA DPGGTSWEED EDLWDVFFRG  180
DQIFSDIDWM MFDSSPPLGP *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075916.11e-107ethylene-responsive transcription factor ERF038-like
TrEMBLA0A068UIW01e-147A0A068UIW0_COFCA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.13e-19related to AP2 6l