PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g20980
Common NameGSCOC_T00027243001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 289aa    MW: 32954.9 Da    PI: 9.682
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g20980genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3543e-1728118199
                  EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  ffkv+      +s++l++p  f++++ g++    k ++l+  +g+ W+v +  + +++++++++GW+ F++ + Lk g+f+vF++dg+s f  +vk+f
  Cc07_g20980  28 FFKVF--LPDVSSQQLRVPPLFVKKFsGLV---CKRIKLRCIDGKIWDVDV--EETQEGVFMKNGWQAFADHHLLKLGEFLVFRYDGNSVF--TVKIF 116
                  78888..44555566***********7777...357***************..**********************************9***..****9 PP

                  -S CS
           B3  98 rk 99 
                  r+
  Cc07_g20980 117 RT 118
                  96 PP
2B341.42.6e-132032871098
                  HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   ++ + l+l+k f++++++k   +  ++l +e+ ++W vk+++ + ++   +++GW  F k+ng++egD + + +d+  +++ +++v++
  Cc07_g20980 203 RTQMHKLMLSKGFISKNNIK--LGSNVMLCNEKEEKWPVKFTHFRDGR-ACIGTGWMAFWKDNGMCEGDKFKLVFDE-GRGRKMITVCK 287
                  556688***********877..5568***************8766664.56899***************97777664.66666888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-2123121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-2225121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.87226119IPR003340B3 DNA binding domain
CDDcd100173.38E-1626117No hitNo description
SMARTSM010195.1E-1428119IPR003340B3 DNA binding domain
PfamPF023621.6E-1528118IPR003340B3 DNA binding domain
PROSITE profilePS5086310.687194288IPR003340B3 DNA binding domain
SMARTSM010191.2E-5197288IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.1E-12202277IPR015300DNA-binding pseudobarrel domain
PfamPF023622.5E-9202286IPR003340B3 DNA binding domain
SuperFamilySSF1019366.08E-13204278IPR015300DNA-binding pseudobarrel domain
CDDcd100172.86E-7207287No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MVKPGRGRPR KDSSSSSYLS FMDARPEFFK VFLPDVSSQQ LRVPPLFVKK FSGLVCKRIK  60
LRCIDGKIWD VDVEETQEGV FMKNGWQAFA DHHLLKLGEF LVFRYDGNSV FTVKIFRTHG  120
CKEEAFVREK IAADVKIEPL EDQIAATEHT CAKHSCNSDG EGNKLDTSRG VREGKQQMSS  180
RFHSQTVQTE RDSEFGSIRS ISRTQMHKLM LSKGFISKNN IKLGSNVMLC NEKEEKWPVK  240
FTHFRDGRAC IGTGWMAFWK DNGMCEGDKF KLVFDEGRGR KMITVCKV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027073758.10.0putative B3 domain-containing protein At5g66980 isoform X3
TrEMBLA0A068UJJ50.0A0A068UJJ5_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37792244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-27B3 family protein