PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc07_g21390

Common Name

GSCOC_T00016951001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

EIL

Protein Properties

Length: 609aa MW: 68464.7 Da PI: 5.236

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc07_g21390	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	472.8	2.3e-144	45	420	1	354
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkek 98 +el++rmw+d+mll++lk++kk ke + k+++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipe+gkpv+gasd+LraWWkek Cc07_g21390 45 DELERRMWRDKMLLRKLKGQKKI----KEGVDDGMKQHQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPENGKPVTGASDNLRAWWKEK 138 79*****************97....5666778899********************************************************* PP XXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--.---- CS EIN3 99 vefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdqgtppyk 196 v+fdrn+paai+ky ++ i+++ +++ + +s++h l+elqDTtlgSLLsalmqhcdppqrrfplekg++pPWWP G e+ww+ lgl+kdq ppyk Cc07_g21390 139 VRFDRNAPAAIAKYRIAHSIPGKVEDC-CDITSTPHALQELQDTTLGSLLSALMQHCDPPQRRFPLEKGIPPPWWPIGIEDWWPDLGLPKDQVCPPYK 235 ******************99999.779*************************************************************** PP -GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XXXXXX.XXXXXXXXXXXXXXXXXXXXXX CS EIN3 197 kphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah..ssslrk.qspkvtlsceqkedvegkkesk 291 kphdlkkawkv+vLtavikhmsp+i++i++l+rqsk+lqdkm+akes+++l+++n+ee +++++++ ++ +++ ++ + +++++dv+g + + Cc07_g21390 236 KPHDLKKAWKVGVLTAVIKHMSPDISKIQKLVRQSKCLQDKMTAKESATWLAIINHEEVSAQKLYPDiyPRMFSEaGNGLYSSVESNDYDVDGVNGEG 333 ***************************************************************976654443777777778899777777 PP .XXXXXXXXXX............................XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXXX CS EIN3 292 ikhvqavktta............................gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqney 354 +++++ ++ + +++krk ++++ +++ ++tcq+ q+++s ++++f+d++ ++++++ Cc07_g21390 334 SLDANCEP-QNllkmgidvskdgkmlpslapvkgevvdiDPVLIHKRK--IMSNEGDLDQK-IYTCQNPQCPYSGYNMGFHDRTLRNNHQI 420 44444444.445889******************88777888887..34444444454.6************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	6.6E-125	45	293	No hit	No description
Gene3D	G3DSA:1.10.3180.10	8.6E-72	168	302	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamily	SSF116768	3.92E-59	172	295	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence Send to blast
MFDETGIFGN LDFLSTPCGE GDVPPEFEPG RVVDENYSDE EMDVDELERR MWRDKMLLRK 60 LKGQKKIKEG VDDGMKQHQS QEQARRKKMS RAQDGILKYM LKMMEVCKAQ GFVYGIIPEN 120 GKPVTGASDN LRAWWKEKVR FDRNAPAAIA KYRIAHSIPG KVEDCCDITS TPHALQELQD 180 TTLGSLLSAL MQHCDPPQRR FPLEKGIPPP WWPIGIEDWW PDLGLPKDQV CPPYKKPHDL 240 KKAWKVGVLT AVIKHMSPDI SKIQKLVRQS KCLQDKMTAK ESATWLAIIN HEEVSAQKLY 300 PDIYPRMFSE AGNGLYSSVE SNDYDVDGVN GEGSLDANCE PQNLLKMGID VSKDGKMLPS 360 LAPVKGEVVD IDPVLIHKRK IMSNEGDLDQ KIYTCQNPQC PYSGYNMGFH DRTLRNNHQI 420 NCPYRLSASQ NLGIMNYQPY KKKPDVISAP SVQLKPASQP VIEHPSCLSI SKLGIPEDGQ 480 KMISGLMSMY DDSVQEKTCF DFGIDTAAED QNLQQQIIQL HGDQSFFRPG VTMGGSISKE 540 TSLTLSHSAF PSTEFLYDNG NCKSTDDSGF NGNLNSNLDF SFGPEFNMES VDYSMDLFPK 600 EDITTWYT*

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence Send to blast

MFDETGIFGN LDFLSTPCGE GDVPPEFEPG RVVDENYSDE EMDVDELERR MWRDKMLLRK  60
LKGQKKIKEG VDDGMKQHQS QEQARRKKMS RAQDGILKYM LKMMEVCKAQ GFVYGIIPEN  120
GKPVTGASDN LRAWWKEKVR FDRNAPAAIA KYRIAHSIPG KVEDCCDITS TPHALQELQD  180
TTLGSLLSAL MQHCDPPQRR FPLEKGIPPP WWPIGIEDWW PDLGLPKDQV CPPYKKPHDL  240
KKAWKVGVLT AVIKHMSPDI SKIQKLVRQS KCLQDKMTAK ESATWLAIIN HEEVSAQKLY  300
PDIYPRMFSE AGNGLYSSVE SNDYDVDGVN GEGSLDANCE PQNLLKMGID VSKDGKMLPS  360
LAPVKGEVVD IDPVLIHKRK IMSNEGDLDQ KIYTCQNPQC PYSGYNMGFH DRTLRNNHQI  420
NCPYRLSASQ NLGIMNYQPY KKKPDVISAP SVQLKPASQP VIEHPSCLSI SKLGIPEDGQ  480
KMISGLMSMY DDSVQEKTCF DFGIDTAAED QNLQQQIIQL HGDQSFFRPG VTMGGSISKE  540
TSLTLSHSAF PSTEFLYDNG NCKSTDDSGF NGNLNSNLDF SFGPEFNMES VDYSMDLFPK  600
EDITTWYT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4zds_A	6e-77	170	302	1	133	Protein ETHYLENE INSENSITIVE 3
4zds_B	6e-77	170	302	1	133	Protein ETHYLENE INSENSITIVE 3
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor acting as a positive regulator in the ethylene response pathway. Is required for ethylene responsiveness in adult plant tissues. Binds a primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter with consequence to activate the transcription of this gene. {ECO:0000269\|PubMed:9215635, ECO:0000269\|PubMed:9851977}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027107316.1	0.0	ETHYLENE INSENSITIVE 3-like 1 protein
Swissprot	O24606	0.0	EIN3_ARATH; Protein ETHYLENE INSENSITIVE 3
TrEMBL	A0A068V647	0.0	A0A068V647_COFCA; Uncharacterized protein
STRING	VIT_13s0047g00250.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA304	23	178

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20770.1	1e-172	EIL family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kim HG, et al. GDSL LIPASE1 modulates plant immunity through feedback regulation of ethylene signaling. Plant Physiol., 2013. 163(4): p. 1776-91 [PMID:24170202] Zhong S, et al. Ethylene-orchestrated circuitry coordinates a seedling's response to soil cover and etiolated growth. Proc. Natl. Acad. Sci. U.S.A., 2014. 111(11): p. 3913-20 [PMID:24599595] Kim HG, et al. GDSL lipase 1 regulates ethylene signaling and ethylene-associated systemic immunity in Arabidopsis. FEBS Lett., 2014. 588(9): p. 1652-8 [PMID:24631536] Jourda C, et al. Expansion of banana (Musa acuminata) gene families involved in ethylene biosynthesis and signalling after lineage-specific whole-genome duplications. New Phytol., 2014. 202(3): p. 986-1000 [PMID:24716518] Zhang GB,Yi HY,Gong JM The Arabidopsis ethylene/jasmonic acid-NRT signaling module coordinates nitrate reallocation and the trade-off between growth and environmental adaptation. Plant Cell, 2014. 26(10): p. 3984-98 [PMID:25326291] Wang J, et al. Arabidopsis ROOT HAIR DEFECTIVE3 is involved in nitrogen starvation-induced anthocyanin accumulation. J Integr Plant Biol, 2015. 57(8): p. 708-21 [PMID:25494721] Ge XM, et al. Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis. Plant J., 2015. 82(1): p. 138-50 [PMID:25704455] Kazan K Diverse roles of jasmonates and ethylene in abiotic stress tolerance. Trends Plant Sci., 2015. 20(4): p. 219-29 [PMID:25731753] Yang C, et al. MAOHUZI6/ETHYLENE INSENSITIVE3-LIKE1 and ETHYLENE INSENSITIVE3-LIKE2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice. Plant Physiol., 2015. 169(1): p. 148-65 [PMID:25995326] Contreras-Cornejo HA, et al. Mitogen-Activated Protein Kinase 6 and Ethylene and Auxin Signaling Pathways Are Involved in Arabidopsis Root-System Architecture Alterations by Trichoderma atroviride. Mol. Plant Microbe Interact., 2015. 28(6): p. 701-10 [PMID:26067203] Li J,Xu HH,Liu WC,Zhang XW,Lu YT Ethylene Inhibits Root Elongation during Alkaline Stress through AUXIN1 and Associated Changes in Auxin Accumulation. Plant Physiol., 2015. 168(4): p. 1777-91 [PMID:26109425] Street IH, et al. Ethylene Inhibits Cell Proliferation of the Arabidopsis Root Meristem. Plant Physiol., 2015. 169(1): p. 338-50 [PMID:26149574] Ju C,Chang C Mechanistic Insights in Ethylene Perception and Signal Transduction. Plant Physiol., 2015. 169(1): p. 85-95 [PMID:26246449] Qing D, et al. Quantitative and Functional Phosphoproteomic Analysis Reveals that Ethylene Regulates Water Transport via the C-Terminal Phosphorylation of Aquaporin PIP2;1 in Arabidopsis. Mol Plant, 2016. 9(1): p. 158-174 [PMID:26476206] Zhang Y,Liu J,Chai J,Xing D Mitogen-activated protein kinase 6 mediates nuclear translocation of ORE3 to promote ORE9 gene expression in methyl jasmonate-induced leaf senescence. J. Exp. Bot., 2016. 67(1): p. 83-94 [PMID:26507893] Li X,Pan Y,Chang B,Wang Y,Tang Z NO Promotes Seed Germination and Seedling Growth Under High Salt May Depend on EIN3 Protein in Arabidopsis. Front Plant Sci, 2015. 6: p. 1203 [PMID:26779234] Yu Y, et al. Salt Stress and Ethylene Antagonistically Regulate Nucleocytoplasmic Partitioning of COP1 to Control Seed Germination. Plant Physiol., 2016. 170(4): p. 2340-50 [PMID:26850275] Pelagio-Flores R,Ruiz-Herrera LF,López-Bucio J Serotonin modulates Arabidopsis root growth via changes in reactive oxygen species and jasmonic acid-ethylene signaling. Physiol Plant, 2016. 158(1): p. 92-105 [PMID:26864878] Tao S, et al. The THO/TREX Complex Active in miRNA Biogenesis Negatively Regulates Root-Associated Acid Phosphatase Activity Induced by Phosphate Starvation. Plant Physiol., 2016. 171(4): p. 2841-53 [PMID:27329222] Song L, et al. The Molecular Mechanism of Ethylene-Mediated Root Hair Development Induced by Phosphate Starvation. PLoS Genet., 2016. 12(7): p. e1006194 [PMID:27427911] Jeong J, et al. Phytochrome and Ethylene Signaling Integration in Arabidopsis Occurs via the Transcriptional Regulation of Genes Co-targeted by PIFs and EIN3. Front Plant Sci, 2016. 7: p. 1055 [PMID:27486469] Tsai KJ,Lin CY,Ting CY,Shih MC Ethylene-Regulated Glutamate Dehydrogenase Fine-Tunes Metabolism during Anoxia-Reoxygenation. Plant Physiol., 2016. 172(3): p. 1548-1562 [PMID:27677986] Zhang F, et al. EIN2-dependent regulation of acetylation of histone H3K14 and non-canonical histone H3K23 in ethylene signalling. Nat Commun, 2016. 7: p. 13018 [PMID:27694846] Liu G, et al. Local Transcriptional Control of YUCCA Regulates Auxin Promoted Root-Growth Inhibition in Response to Aluminium Stress in Arabidopsis. PLoS Genet., 2016. 12(10): p. e1006360 [PMID:27716807] Shen X,Li Y,Pan Y,Zhong S Activation of HLS1 by Mechanical Stress via Ethylene-Stabilized EIN3 Is Crucial for Seedling Soil Emergence. Front Plant Sci, 2016. 7: p. 1571 [PMID:27822221] Shi H, et al. The Red Light Receptor Phytochrome B Directly Enhances Substrate-E3 Ligase Interactions to Attenuate Ethylene Responses. Dev. Cell, 2016. 39(5): p. 597-610 [PMID:27889482] Wawrzyńska A,Sirko A EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor. Plant Sci., 2016. 253: p. 50-57 [PMID:27968996] Zemlyanskaya EV,Levitsky VG,Oshchepkov DY,Grosse I,Mironova VV The Interplay of Chromatin Landscape and DNA-Binding Context Suggests Distinct Modes of EIN3 Regulation in Arabidopsis thaliana. Front Plant Sci, 2016. 7: p. 2044 [PMID:28119721] He X,Jiang J,Wang CQ,Dehesh K ORA59 and EIN3 interaction couples jasmonate-ethylene synergistic action to antagonistic salicylic acid regulation of PDF expression. J Integr Plant Biol, 2017. 59(4): p. 275-287 [PMID:28168848] Abozeid A, et al. Ethylene Improves Root System Development under Cadmium Stress by Modulating Superoxide Anion Concentration in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 253 [PMID:28286514] Quan R, et al. EIN3 and SOS2 synergistically modulate plant salt tolerance. Sci Rep, 2017. 7: p. 44637 [PMID:28300216] Kim GD,Cho YH,Yoo SD Regulatory Functions of Cellular Energy Sensor SNF1-Related Kinase1 for Leaf Senescence Delay through ETHYLENE- INSENSITIVE3 Repression. Sci Rep, 2017. 7(1): p. 3193 [PMID:28600557] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Liu X,Li Y,Zhong S Interplay between Light and Plant Hormones in the Control of Arabidopsis Seedling Chlorophyll Biosynthesis. Front Plant Sci, 2017. 8: p. 1433 [PMID:28861105] Zhang F, et al. EIN2 mediates direct regulation of histone acetylation in the ethylene response. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(38): p. 10274-10279 [PMID:28874528] Yan Z, et al. Type B Response Regulators Act As Central Integrators in Transcriptional Control of the Auxin Biosynthesis Enzyme TAA1. Plant Physiol., 2017. 175(3): p. 1438-1454 [PMID:28931628] Liu X, et al. EIN3 and PIF3 Form an Interdependent Module That Represses Chloroplast Development in Buried Seedlings. Plant Cell, 2017. 29(12): p. 3051-3067 [PMID:29114016] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944] Harkey AF, et al. Identification of Transcriptional and Receptor Networks That Control Root Responses to Ethylene. Plant Physiol., 2018. 176(3): p. 2095-2118 [PMID:29259106] Zhang F,Wang L,Ko EE,Shao K,Qiao H Histone Deacetylases SRT1 and SRT2 Interact with ENAP1 to Mediate Ethylene-Induced Transcriptional Repression. Plant Cell, 2018. 30(1): p. 153-166 [PMID:29298835] Lv B, et al. Brassinosteroids regulate root growth by controlling reactive oxygen species homeostasis and dual effect on ethylene synthesis in Arabidopsis. PLoS Genet., 2018. 14(1): p. e1007144 [PMID:29324765] Dou L,He K,Higaki T,Wang X,Mao T Ethylene Signaling Modulates Cortical Microtubule Reassembly in Response to Salt Stress. Plant Physiol., 2018. 176(3): p. 2071-2081 [PMID:29431630] Meng LS,Xu MK,Wan W,Wang JY Integration of Environmental and Developmental (or Metabolic) Control of Seed Mass by Sugar and Ethylene Metabolisms in Arabidopsis. J. Agric. Food Chem., 2018. 66(13): p. 3477-3488 [PMID:29528636] Munné-Bosch S,Simancas B,Müller M Ethylene signaling cross-talk with other hormones in Arabidopsis thaliana exposed to contrasting phosphate availability: Differential effects in roots, leaves and fruits. J. Plant Physiol., 2018. 226: p. 114-122 [PMID:29758376]