PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g01380
Common NameGSCOC_T00038395001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NF-YA
Protein Properties Length: 329aa    MW: 36069.8 Da    PI: 8.8946
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g01380genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA927.6e-29171225358
    CBFB_NFYA   3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  p+ VNaKQy++Il+RR  Rakle+++k+  k rkpylheSRhkhA+rRpRgsgGrF
  Cc08_g01380 171 PVLVNAKQYRAILRRRRIRAKLEAQNKM-LKFRKPYLHESRHKHAVRRPRGSGGRF 225
                  99**************************.9*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.6E-31167228IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115232.384168228IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.1E-25171225IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.9E-22171193IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.9E-22202225IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MQSSCNKDGQ SLAPFLITCS SLWNSTEQSK FSPSKSVITG PESSNNEFFH VKQSDLLFQE  60
LDSLSTLSTC QSQYVMADAA RNSPSGDETH GRRAEQYQRS PLLCVSADFT VSQVQLDYNK  120
SLACIPFPGS ESYFGGLVAA YGPNALVCPP MVGMLHARVP LPPLQCAEGM PVLVNAKQYR  180
AILRRRRIRA KLEAQNKMLK FRKPYLHESR HKHAVRRPRG SGGRFLNMKD IKPSKLSSPS  240
YTEDTPLKML AGDISGSEAR LSESCSWAAS TPSGSDVTSI FNGDDIFQHP ENQVSASSFH  300
MGMRVGKDST HLEAGNLLFL SIDGRARN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-17171239472NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209218RHKHAVRRPR
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027083064.10.0nuclear transcription factor Y subunit A-3-like isoform X2
SwissprotQ93ZH23e-43NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A068UY210.0A0A068UY21_COFCA; Uncharacterized protein
STRINGXP_009608945.12e-96(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48002027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.15e-39nuclear factor Y, subunit A3