PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc08_g01580

Common Name

GSCOC_T00038365001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

SRS

Protein Properties

Length: 380aa MW: 42066.7 Da PI: 7.5774

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc08_g01580	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	24.4	8.1e-08	46	82	5	41
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvks 41 + +C CGn a+ C ++ C+ CC C+ hv Cc08_g01580 46 KPKCIKCGNVARSRCPYQSCKSCCAKAQNPCHIHVLK 82 568*******************************954 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.5E-5	48	90	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MAASSPALSN NSNDTPSSSG AGAATFNVNT PPSAAATSKN LRGLNKPKCI KCGNVARSRC 60 PYQSCKSCCA KAQNPCHIHV LKGGSNIPDK INSSSSPATD PQSADVSHSG NSHRVASLRQ 120 LSNTFAQFNN LQTPVRSRKP LTRKDAQVIN EWRFLKLREF RDRNIEAENE AFDRYTRNVS 180 LLEEVFCVNS ALDGQSEEGS SAPNTDRSVD DCNEIMVPGL KLKLRSNPVR IENFRKRVQY 240 IVDQGLRELN NIESNDGNDE LGDPDETGNR PKKMKSSWRA ERASTLSDLI DKLNKARNEE 300 DLKACFDMYS RISKRASKTS QVDSVLAEAS DEQNPIDNLL HRERASYAPP KWFSSTPIDQ 360 ESLCRIDSYF CSLEDVEDL*

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MAASSPALSN NSNDTPSSSG AGAATFNVNT PPSAAATSKN LRGLNKPKCI KCGNVARSRC  60
PYQSCKSCCA KAQNPCHIHV LKGGSNIPDK INSSSSPATD PQSADVSHSG NSHRVASLRQ  120
LSNTFAQFNN LQTPVRSRKP LTRKDAQVIN EWRFLKLREF RDRNIEAENE AFDRYTRNVS  180
LLEEVFCVNS ALDGQSEEGS SAPNTDRSVD DCNEIMVPGL KLKLRSNPVR IENFRKRVQY  240
IVDQGLRELN NIESNDGNDE LGDPDETGNR PKKMKSSWRA ERASTLSDLI DKLNKARNEE  300
DLKACFDMYS RISKRASKTS QVDSVLAEAS DEQNPIDNLL HRERASYAPP KWFSSTPIDQ  360
ESLCRIDSYF CSLEDVEDL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027084205.1	0.0	uncharacterized protein LOC113706491
TrEMBL	A0A068UY06	0.0	A0A068UY06_COFCA; Uncharacterized protein
STRING	XP_009786844.1	1e-145	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8544	11	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	4e-95