PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g01890
Common NameGSCOC_T00037642001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 325aa    MW: 35542.3 Da    PI: 9.6844
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g01890genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.13.6e-07265306443
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                      W++ Ed+ l++a k ++++   +W++Ia+ ++ g+t   c  r
      Cc08_g01890 265 WSAGEDLALLNALKAFPKDvpmRWEKIAAAVP-GKTKPACMKR 306
                      ********************************.****999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.6167220IPR001005SANT/Myb domain
PROSITE profilePS500904.867171204IPR017877Myb-like domain
SMARTSM007174.7E-5261313IPR001005SANT/Myb domain
SuperFamilySSF466891.64E-9262310IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-5264313IPR009057Homeodomain-like
PfamPF002491.3E-5265306IPR001005SANT/Myb domain
CDDcd001677.47E-6265306No hitNo description
PROSITE profilePS500906.632265306IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEFLDEDARP RFVLQSKSTP EPAQSSQDPP SLRKPTLFIS LTVSALFLAL SFLYFTLDPF  60
QSLFIWFSLS LLVGPFAPLS LTAGDIRVGL GPPLPEPTKE TEISDEVSKR SGKRSVKSTR  120
RQDGSGNGSG STRPDYGWEA VEQNGFSVNR NGLVAKFEKS EGKVVNEEVQ WDAGDDELLK  180
KLMGKHPVGK PGRWEAVTEG FKGRHSVDSV IKRSKELGEK KVSDEDSYKK FLKDRKPVDR  240
RIEGGNESHV GGLQSVEAKG DSSGWSAGED LALLNALKAF PKDVPMRWEK IAAAVPGKTK  300
PACMKRVAEL KKDFRSSKAG SSEA*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027084804.10.0transcription factor MAMYB-like
RefseqXP_027084805.10.0transcription factor MAMYB-like
SwissprotQ9ASQ21e-69MAMYB_ARATH; Transcription factor MAMYB
TrEMBLA0A068UZ620.0A0A068UZ62_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000622211e-118(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA126681011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.14e-67MYB_related family protein