PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g02600
Common NameGSCOC_T00037738001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 237aa    MW: 25895.8 Da    PI: 5.2445
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g02600genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000117294123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C + F++   L  H+++H
  Cc08_g02600 72 YTCTFCRREFRSAQALGGHMNVH 94
                 9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.59E-66999No hitNo description
PfamPF139121.8E-57295IPR007087Zinc finger, C2H2
SMARTSM003550.00667294IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1577299IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MAAELGLLSL TQLQKLAQFQ PPQPQPPTSS ATTSWMWNPK QVAEDEDDSW EVRAFEQDTG  60
NINGTTWPPR SYTCTFCRRE FRSAQALGGH MNVHRRDRAR LHQAPPGMNN PTSPSTASST  120
LIIPAQEFIT NGGLCLVYSL ANPNGTVLTP TPMNSCMDSP SPLLSVSSFP TNTLISPCPY  180
TYPATPHSMN SSICQSSNTE RSASNSNENN ILDNIGQNRK DSAIEELDLE LRLGRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-136794229superman protein
2l1o_A2e-136794229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027084413.11e-171zinc finger protein 10-like
RefseqXP_027183021.11e-171zinc finger protein 10-like
TrEMBLA0A068UXM01e-173A0A068UXM0_COFCA; Uncharacterized protein
STRINGEOY240173e-83(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59532133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.13e-39C2H2 family protein