PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g03060
Common NameGSCOC_T00037815001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 329aa    MW: 36828.3 Da    PI: 4.8362
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g03060genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.5e-171158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd++l+++   +G +tWkt+++  g++R++k+c++rw +yl
      Cc08_g03060 11 KGAWSKEEDQILIHYMGNHGLETWKTVSEQAGLNRCGKSCRLRWTNYL 58
                     79********************************************97 PP
2Myb_DNA-binding46.58.5e-1564107146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg ++++E   ++ + +++G++ W++Ia++++ gRt++++k++w++
      Cc08_g03060  64 RGEFSADEAATIISLQREHGNK-WSRIAAHLP-GRTDNDIKNFWNT 107
                      899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-21661IPR009057Homeodomain-like
PROSITE profilePS5129416.061658IPR017930Myb domain
SuperFamilySSF466893.52E-278105IPR009057Homeodomain-like
SMARTSM007171.7E-121060IPR001005SANT/Myb domain
PfamPF002495.9E-151158IPR001005SANT/Myb domain
CDDcd001673.46E-91358No hitNo description
PROSITE profilePS5129424.42959113IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-2562113IPR009057Homeodomain-like
SMARTSM007179.6E-1563111IPR001005SANT/Myb domain
PfamPF002491.6E-1364107IPR001005SANT/Myb domain
CDDcd001676.62E-1166109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAASPENGVK KGAWSKEEDQ ILIHYMGNHG LETWKTVSEQ AGLNRCGKSC RLRWTNYLRP  60
GIKRGEFSAD EAATIISLQR EHGNKWSRIA AHLPGRTDND IKNFWNTRLK KKLLRRVINP  120
TIHKPIPDFN LLNFADQAQL LSVSDNPNLE AALANNANEL IKNQIQVLQN MLQIINPNPL  180
QYFQGNLDLY EFIQLNGVFD RTTTDLALNP LQAQSMIAGF RNESPVLLNQ QQPYTSNSLP  240
CFDGETIPCP VLDDNIIHSD NICNSEYSLP SLVSAAPESS TVKQMESFYV STEAPEQYSV  300
SDAWENLVDI DEASGSFWKD NFGFPADG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-23111134105MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-23111134105C-Myb DNA-Binding Domain
1msf_C5e-23111134105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027085063.10.0transcription factor MYB41-like
TrEMBLA0A068UWY50.0A0A068UWY5_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.12e-53MYB-like 102