PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc08_g03350

Common Name

GSCOC_T00010781001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Dof

Protein Properties

Length: 157aa MW: 18248.8 Da PI: 10.4464

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc08_g03350	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	34.5	4.2e-11	131	155	2	26
zf-Dof 2 kekalkcprCdstntkfCyynnysl 26 ke++l+cpr +stntkfCyynny+l Cc08_g03350 131 KEQTLNCPRHNSTNTKFCYYNNYNL 155 7899*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-9	123	156	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.7E-8	133	155	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MYFVVFFAFQ NLMRVFLKIL TNFNTTLHPL PTTTSSVQCF QEELKIEKGW EEKKKQENKE 60 GERKESGRSR KAKQGREKSG RKIKSNNEID GKINSIVPNF SRANRVYVST FFCTISCSKP 120 GSLERKVRPQ KEQTLNCPRH NSTNTKFCYY NNYNLS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A068VD76	1e-111	A0A068VD76_COFCA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-12	Dof family protein