PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc08_g03360

Common Name

GSCOC_T00010780001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Dof

Protein Properties

Length: 167aa MW: 18952.7 Da PI: 10.2053

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc08_g03360	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	108	4.9e-34	81	142	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ke++l+cprC+ tn kfCyynnyslsqPryfCk+ rryWt+G +lrn+PvGgg++knk+sss Cc08_g03360 81 KEQTLNCPRCNLTNVKFCYYNNYSLSQPRYFCKTYRRYWTEGRSLRNIPVGGGSKKNKRSSS 142 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-22	73	133	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.5E-28	83	139	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	25.565	85	139	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MTVCDFEVIE DSRNNIAQLR NWPFHTYPIF SKVFISCKYS MPNFIGLKIV VRQVEEIVVP 60 NGSTTSCLKP GSLDRKVRTQ KEQTLNCPRC NLTNVKFCYY NNYSLSQPRY FCKTYRRYWT 120 EGRSLRNIPV GGGSKKNKRS SSSSSSSSSS TSSSKKLPNL IPICFS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027083351.1	6e-52	LOW QUALITY PROTEIN: dof zinc finger protein DOF1.8-like
Swissprot	Q8LAP8	7e-33	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A068VCT2	1e-117	A0A068VCT2_COFCA; Uncharacterized protein
STRING	EOY23946	4e-42	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64620.1	4e-31	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]