PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g03970
Common NameGSCOC_T00034197001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family BBR-BPC
Protein Properties Length: 234aa    MW: 25646.6 Da    PI: 10.7149
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g03970genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind224.77.8e-6966233130301
    GAGA_bind 130 eklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGn 227
                  +  +++  ++++ ++k++  +++ +      +++ k+++kk +++kk++++++    ++ e+k+ dlv ++ ++D s++P+P CsCtG+ r CYkWG+
  Cc08_g03970  66 HGPTKNRFVTKPVKIKKNWPPSNDAC--PSNKSRPKQPNKKLSTTKKTKRPPKI--GVNIERKNPDLVYDEAKFDFSRVPPPFCSCTGVARACYKWGS 159
                  44444555555555555555553333..33344555666666777777777775..499*************************************** PP

    GAGA_bind 228 GGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                  G WqS+CC t++S+yPLP+s+ r+gaR+ grKmS+ga++klL + a+eG dls+p+DLk+hWAkHGtnkfvti+
  Cc08_g03970 160 GSWQSSCCNTNLSQYPLPMSPSRPGARVPGRKMSHGAYTKLLCRFATEGRDLSQPIDLKNHWAKHGTNKFVTIK 233
                  *************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576135No hitNo description
SMARTSM012261.8E-5335233IPR010409GAGA-binding transcriptional activator
PfamPF062173.1E-6355233IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MVAFSKRCSM ASEVNHAEPP FPQFPGAYPG ASFSCGGFAF HPSQATQMDS KAGIAAVPIR  60
SVPPLHGPTK NRFVTKPVKI KKNWPPSNDA CPSNKSRPKQ PNKKLSTTKK TKRPPKIGVN  120
IERKNPDLVY DEAKFDFSRV PPPFCSCTGV ARACYKWGSG SWQSSCCNTN LSQYPLPMSP  180
SRPGARVPGR KMSHGAYTKL LCRFATEGRD LSQPIDLKNH WAKHGTNKFV TIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027084146.11e-162protein BASIC PENTACYSTEINE7-like
RefseqXP_027084147.11e-162protein BASIC PENTACYSTEINE7-like
SwissprotO822861e-58BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLA0A068UT921e-171A0A068UT92_COFCA; Uncharacterized protein
STRINGXP_010261623.16e-65(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137141415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.45e-61basic pentacysteine 7