PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g05560
Common NameGSCOC_T00024333001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 186aa    MW: 20920.1 Da    PI: 5.6738
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g05560genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.83e-111051593896
                  EEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3  38 ledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  +  + g++We  +  +++ +r+    GWk+Fv +n+Lk gD + F+l++ s+++ v+kv
  Cc08_g05560 105 VLISCGKRWETFYHGDGSAKRF----GWKRFVMDNDLKKGDCCFFELMECSKTNIVFKV 159
                  3335789***999556666654....9*******************9977888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-1367163IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-1470160IPR015300DNA-binding pseudobarrel domain
CDDcd100172.45E-1370163No hitNo description
PROSITE profilePS5086310.37772165IPR003340B3 DNA binding domain
SMARTSM010190.003472165IPR003340B3 DNA binding domain
PfamPF023621.3E-8108159IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MPGTSVQPLH GIVKEEPFSI LPYIDEKPCL DAMNTNFVSN RQRSKFQPGS SNGTAEVDDI  60
EYYTISGMKP YFDLILAKTH VNHPFRVNLP SRMVPELPFE LVPMVLISCG KRWETFYHGD  120
GSAKRFGWKR FVMDNDLKKG DCCFFELMEC SKTNIVFKVI ILRGSLPFGG GPEDGDTPET  180
AIFIE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027084365.11e-137B3 domain-containing protein Os04g0386900-like isoform X1
TrEMBLA0A068UG131e-135A0A068UG13_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18192154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.12e-08B3 family protein